Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	Contig0657	1024

Contig Map:

(ProjectName=FAECPM SequenceName=Contig0657):
FAECPM007_B01_PDNRF:
FAECPM030_H02_PDNR-F:

Sequences View:[Contig0657](Contig Seguence)

1024 bases 
GGTCGCGCAACCTGCAAACCCTGAACTATACACTGGTTTCAAGGTAATCGAGGTGTTAGAGGGAGAGAATGGAGGGAGAAGAAGGGAGCCAGCAGCCGCAGCTTGTGCTTGCACACAAGCTTTTCCACCTCACGCACCCGGAAGTAGAGGATATCGACAAGGTACGGCTCCGCGATGAAGTCTTCGCCGCTGTCAAAGCCGACGACATGGCGTCTTTATACGAGTCGCTCGCCGCTGCTTCCGTGCTCGAGATGGATGCGGCCTTACTTGATTCCATGCGTAAGAGGATCGAAGACGAGATCAAGAAGCTGGACGACAAGATTGCCGATGCTGAGGAAAATCTTGGTGAAAGTGAAGTTCGTGAAGCTCACCTTGCGAAGTCATTGTACTTCATTCGAATTGGCGACAAGGAGAAAGCACTCGAGCAGCTAAAAGTAACAGAAAGCAAAACGGTTGCAGTTGGCCAGAAGATGGATTTGGTATTCTACACTTTGCAGATTGGTTTTTTCCACATGGACTTCGATCTAATTTCTCGCTCACTTGACAAAGCTAAGAATTTATTTGAGGAGGGTGGTGACTGGGAGAGAAAAAATCGTTTGAAAGTATATGATGGCCTGTATTGTATGGCCACCAGGAATTTTAAAAGAGCAGCCAATTTATTTTTAGACTCTATATCGACATTTACAACTTATGAGCTGTTTCCTTATGACACTTTCATATTCTATACTGTTCTTACAAGCATTATATCACTGGACAGAGTATCACTCAAAGAAAAGGTTGTGGATGCACCTGAAATCCTTACAGTGATTGGGAAGATTCCTCATCTATCCGACTTCCTGAACTCCCTCCATGAATGCCAGTACAAGTCATTCTTTATTGCTTTCTCTGGCTTGACTGAGCAGATAAAGCTAGATCGCTATCTCCACCCTCATTTTAGGTATTACATGAGAGAAGTCCGAACCGTTGTGTATTCTCAGTTTCTCGAATCCTATAGAGTGTACATGAAGCATGCATAGCATGGGTT

Sequences View:[Contig0657](Singleton Sequence)

Contig0657 1024  bases 
GGTCGCGCAACCTGCAAACCCTGAACTATACACTGGTTTCAAGGTAATCGAGGTGTTAGAGGGAGAGAATGGAGGGAGAAGAAGGGAGCCAGCAGCCGCAGCTTGTGCTTGCACACAAGCTTTTCCACCTCACGCACCCGGAAGTAGAGGATATCGACAAGGTACGGCTCCGCGATGAAGTCTTCGCCGCTGTCAAAGCCGACGACATGGCGTCTTTATACGAGTCGCTCGCCGCTGCTTCCGTGCTCGAGATGGATGCGGCCTTACTTGATTCCATGCGTAAGAGGATCGAAGACGAGATCAAGAAGCTGGACGACAAGATTGCCGATGCTGAGGAAAATCTTGGTGAAAGTGAAGTTCGTGAAGCTCACCTTGCGAAGTCATTGTACTTCATTCGAATTGGCGACAAGGAGAAAGCACTCGAGCAGCTAAAAGTAACAGAAAGCAAAACGGTTGCAGTTGGCCAGAAGATGGATTTGGTATTCTACACTTTGCAGATTGGTTTTTTCCACATGGACTTCGATCTAATTTCTCGCTCACTTGACAAAGCTAAGAATTTATTTGAGGAGGGTGGTGACTGGGAGAGAAAAAATCGTTTGAAAGTATATGATGGCCTGTATTGTATGGCCACCAGGAATTTTAAAAGAGCAGCCAATTTATTTTTAGACTCTATATCGACATTTACAACTTATGAGCTGTTTCCTTATGACACTTTCATATTCTATACTGTTCTTACAAGCATTATATCACTGGACAGAGTATCACTCAAAGAAAAGGTTGTGGATGCACCTGAAATCCTTACAGTGATTGGGAAGATTCCTCATCTATCCGACTTCCTGAACTCCCTCCATGAATGCCAGTACAAGTCATTCTTTATTGCTTTCTCTGGCTTGACTGAGCAGATAAAGCTAGATCGCTATCTCCACCCTCATTTTAGGTATTACATGAGAGAAGTCCGAACCGTTGTGTATTCTCAGTTTCTCGAATCCTATAGAGTGTACATGAAGCATGCATAGCATGGGTT

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
emb	CAC09486.2	H0811E11.2	Oryza sativa (indica cultivar-group)	389	519 bits (1336)	e-145	259/302 (85%)	282/302 (93%)	+3

KEGG Pathway	GO
Contig0657[1 Pathway]	Contig0657[12 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	Contig0657	AT4G24820	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G24820	AT4G24820	membrane	GO:0016020	other membranes
AT4G24820	AT4G24820	plasma membrane	GO:0005886	plasma membrane
AT4G24820	AT4G24820	"proteasome regulatory particle, lid subcomplex"	GO:0008541	other intracellular components
AT4G24820	AT4G24820	nucleus	GO:0005634	nucleus
AT4G24820	AT4G24820	molecular_function	GO:0003674	unknown molecular functions
AT4G24820	AT4G24820	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT4G24820	AT4G24820	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT4G24820	AT4G24820	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT4G24820	AT4G24820	protein catabolic process	GO:0030163	protein metabolism
AT4G24820	AT4G24820	proteasome complex	GO:0000502	other intracellular components
AT4G24820	AT4G24820	membrane	GO:0016020	other membranes
AT4G24820	AT4G24820	plasma membrane	GO:0005886	plasma membrane

Gene Network Informations
Gene Network	Interact with..
Contig0657[interact with..]	Contig0754

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0754	1043	ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	434 bits (1117)	e-120	221/235 (94%)	229/235 (97%)	+2