Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	FAECPM021_H10_PDNR-F	1015

Contig Map:

(ProjectName=FAECPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FAECPM021_H10_PDNR-F](Singleton Sequence)

FAECPM021_H10_PDNR-F 1015  bases 
GGAAGAGGGAAAACCTCTGCGCAAAGCTGAAGAAAGGTTTATAGCTCGGCTAGATGGATCCACAGTTGGTGGAAGTTACGCAGATCTTTGGACGATTCAAAGCGGCGATGCTGAGGAACGATTTCGGAACCTGCGCCAATCTTCTCTCCCAGCTGAAGGTTCTTCTGACAAAATTTCCAAGCCTACCACCATCATTTCAGCAATCAGCTAATGCTGTTGAGGAGCTGCAGATAGCAAGGGATATATATGAACATGCTGTTGTTTTGAGTGTAAAGACTGAGGACCAAGATGCTTTTGAGAGGGATTTCTTTCAACTGAAGCCTTTTTATACTGACACATGTGGTCTTATTCCACCGTCACCTCAGGAATACCCTATCTTGGGGCTTAATCTCTTAAGGCTCCTTGCACAAAACCGAATAGCAGAATTTCACACCGAGTTAGAACTCCTTTCCCCACTGCATTGGAGAATCCTTGCATCAAACATGCTGTTGAGCTCGAGCAGTCTTTCATGGAGGGTGCTTATAATCGCGTTTTGAGTGCGAGGAAGTCTGTCCCTCATGAATCGTATGTATATTTCATGGATCTCCTTGCAAAAACTGTCAGGGATGAGATTGCAGGCTGCAGCGAGAAAGCGTATGATTCATTGTCTGTCGCTGATGCAAAGAAAATCCTGATGTATACATCTGATCAGGAGCTTCAAGATTACATTTCTGAGGAACACCCGGAATGGGAGATCAAGAATGGATTCCTATTCTTTCAGAAGGCCAAAGAATTACAACCACACAAGGAGATACCTTCCTTACAATTAATCAATCAAACTTTAAGCTATGCAAGGGAGTTGGAGCGGATTGTCTAGAGCTCCAGAATGTTCCAGAAGTCATGACCCCTTAGTTTCAGCTTCTGAACCATTACTAGATATATAAACATTTTTATTTAAGGTCTTGTTTTTTTAAAAAAAAAATCTTTTTTGAATTGTTATGATTCTAAATTGCATGAAGTTGTTTTATGTTGAGCA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ABI31652.1	26S proteasome regulatory particle non-ATPase subunit 12	Camellia sinensis	267	228 bits (581)	e-111	112/133 (84%)	124/133 (93%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[32 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	FAECPM021_H10_PDNR-F	AT1G64520	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G64520	AT1G64520	chloroplast envelope	GO:0009941	plastid
AT1G64520	AT1G64520	chloroplast envelope	GO:0009941	chloroplast
AT1G64520	AT1G64520	chloroplast envelope	GO:0009941	other cytoplasmic components
AT1G64520	AT1G64520	chloroplast envelope	GO:0009941	other intracellular components
AT1G64520	AT1G64520	"proteasome regulatory particle, lid subcomplex"	GO:0008541	other intracellular components
AT1G64520	AT1G64520	nucleus	GO:0005634	nucleus
AT1G64520	AT1G64520	peptidase activity	GO:0008233	hydrolase activity
AT1G64520	AT1G64520	response to heat	GO:0009408	response to stress
AT1G64520	AT1G64520	response to heat	GO:0009408	response to abiotic or biotic stimulus
AT1G64520	AT1G64520	skotomorphogenesis	GO:0009647	developmental processes
AT1G64520	AT1G64520	skotomorphogenesis	GO:0009647	response to abiotic or biotic stimulus
AT1G64520	AT1G64520	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT1G64520	AT1G64520	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT1G64520	AT1G64520	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT1G64520	AT1G64520	protein catabolic process	GO:0030163	protein metabolism
AT1G64520	AT1G64520	flower development	GO:0009908	developmental processes
AT1G64520	AT1G64520	response to auxin stimulus	GO:0009733	other biological processes
AT1G64520	AT1G64520	response to cytokinin stimulus	GO:0009735	other biological processes
AT1G64520	AT1G64520	response to cytokinin stimulus	GO:0009735	other biological processes
AT1G64520	AT1G64520	proteasome complex	GO:0000502	other intracellular components
AT1G64520	AT1G64520	proteasome complex	GO:0000502	other intracellular components
AT1G64520	AT1G64520	leaf development	GO:0048366	developmental processes
AT1G64520	AT1G64520	proteasomal ubiquitin-dependent protein catabolic process	GO:0043161	protein metabolism
AT1G64520	AT1G64520	proteasomal ubiquitin-dependent protein catabolic process	GO:0043161	other cellular processes
AT1G64520	AT1G64520	proteasomal ubiquitin-dependent protein catabolic process	GO:0043161	other metabolic processes
AT1G64520	AT1G64520	proteasome assembly	GO:0043248	other cellular processes
AT1G64520	AT1G64520	post-embryonic root development	GO:0048528	developmental processes
AT1G64520	AT1G64520	regulation of anthocyanin biosynthetic process	GO:0031540	other cellular processes
AT1G64520	AT1G64520	regulation of anthocyanin biosynthetic process	GO:0031540	other metabolic processes
AT1G64520	AT1G64520	response to misfolded protein	GO:0051788	response to stress
AT1G64520	AT1G64520	response to misfolded protein	GO:0051788	response to abiotic or biotic stimulus
AT1G64520	AT1G64520	cotyledon development	GO:0048825	developmental processes

Gene Network Informations
Gene Network	Interact with..
FAECPM021_H10_PDNR-F[interact with..]	Contig0657 FAECPM029_B03_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0657	1024	emb	CAC09486.2	H0811E11.2	Oryza sativa (indica cultivar-group)	389	519 bits (1336)	e-145	259/302 (85%)	282/302 (93%)	+3
FAECPM029_B03_PDNR-F	1034	ref	XP_002313775.1	predicted protein	Populus trichocarpa	392	645 bits (1663)	0.0	329/344 (95%)	337/344 (97%)	+1