Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	Contig0754	1043

Contig Map:

(ProjectName=FAECPM SequenceName=Contig0754):
FAECPM004_C12_PDNRF:
FAECPM018_B03_PDNR-F:

Sequences View:[Contig0754](Contig Seguence)

1043 bases 
GGGAAGAAGCTGCCTGGTGGCACAGCAGTTCCCAAATTTCTCTCAGATCGGTGACCGGACGATGGGCGATAGTCAGTACTCTTTCTCTCTCACCACCTTCAGTCCTTCAGGGAAGCTCGTACAGATAGAGCACGCTCTAATGGCTGTCGGATCCGGGCAGACCTCTCTTGGGATCAAAGCCGCAAATGGTGTTGTTATTGCAACCGAGAAGAAGCTGCCTTCAATTTTAGTGGATGAAACATCTGTCCAGAAGATTCAACTTATGACGCCTAACATTGGCGTTGTCTATAGTGGAATGGGTCCAGATTCCCGTGTATTAGTTAGAAAAAGTCGAAAGCAAGCACAACAGTATTTCAGACTCTACAAAGAAGCAATTCCAGTCACACAACTAGTCAGGGAAACGGCTACCGTAATGCAGGAATTCACTCAGTCTGGTGGCGTAAGGCCTTTTGGTGTTTCTTTGCTAGTTGCTGGATTTGATGACAGTGGTCCGCAGCTTTATCAGGTTGATCCTTCTGGATCATACTTTTCATGGAAAGCTTCTGCTATGGGTAAAAATGTTTCAAATGCAAAGACATTCCTTGAGAAGAGGTACACTGAGGATATGGAGCTTGATGATGCTGTTCATACTGCTATCTTGACCTTGAAAGAAGGTTTTGAAGGCCAAATTTCAGGCAAAAATATTGAAATTGGGTTAATTGGCACTGACCGGAAGTTCAGGGTGTTGAGCGCAGCTGAAATTGATGATTACTTGGCTGAAGTGGAGTAAATCTCTGCTCTTTTTGCTGAAGATCTGATCTAATAACCAAGAAAAAATGAATTGAATTTTTCTCTGTTTAGTGACATTGATCTTCCGATGTATTGTGTAACCCTAAGCCTATCTATTTCAATTAAACCTTTTCTATTCCTCATTTTATTCGATTAGAGGAACTTTGCATAGTTGCATTGGTTTTGACACCCCTTTTTTTTTGGAATTTCCTTGGAGTTGATAAAAGAATGCCCATTTTATTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig0754](Singleton Sequence)

Contig0754 1043  bases 
GGGAAGAAGCTGCCTGGTGGCACAGCAGTTCCCAAATTTCTCTCAGATCGGTGACCGGACGATGGGCGATAGTCAGTACTCTTTCTCTCTCACCACCTTCAGTCCTTCAGGGAAGCTCGTACAGATAGAGCACGCTCTAATGGCTGTCGGATCCGGGCAGACCTCTCTTGGGATCAAAGCCGCAAATGGTGTTGTTATTGCAACCGAGAAGAAGCTGCCTTCAATTTTAGTGGATGAAACATCTGTCCAGAAGATTCAACTTATGACGCCTAACATTGGCGTTGTCTATAGTGGAATGGGTCCAGATTCCCGTGTATTAGTTAGAAAAAGTCGAAAGCAAGCACAACAGTATTTCAGACTCTACAAAGAAGCAATTCCAGTCACACAACTAGTCAGGGAAACGGCTACCGTAATGCAGGAATTCACTCAGTCTGGTGGCGTAAGGCCTTTTGGTGTTTCTTTGCTAGTTGCTGGATTTGATGACAGTGGTCCGCAGCTTTATCAGGTTGATCCTTCTGGATCATACTTTTCATGGAAAGCTTCTGCTATGGGTAAAAATGTTTCAAATGCAAAGACATTCCTTGAGAAGAGGTACACTGAGGATATGGAGCTTGATGATGCTGTTCATACTGCTATCTTGACCTTGAAAGAAGGTTTTGAAGGCCAAATTTCAGGCAAAAATATTGAAATTGGGTTAATTGGCACTGACCGGAAGTTCAGGGTGTTGAGCGCAGCTGAAATTGATGATTACTTGGCTGAAGTGGAGTAAATCTCTGCTCTTTTTGCTGAAGATCTGATCTAATAACCAAGAAAAAATGAATTGAATTTTTCTCTGTTTAGTGACATTGATCTTCCGATGTATTGTGTAACCCTAAGCCTATCTATTTCAATTAAACCTTTTCTATTCCTCATTTTATTCGATTAGAGGAACTTTGCATAGTTGCATTGGTTTTGACACCCCTTTTTTTTTGGAATTTCCTTGGAGTTGATAAAAGAATGCCCATTTTATTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	434 bits (1117)	e-120	221/235 (94%)	229/235 (97%)	+2

KEGG Pathway	GO
Contig0754[1 Pathway]	Contig0754[11 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	Contig0754	AT1G79210	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to stress
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to abiotic or biotic stimulus
AT1G79210	AT1G79210	proteasome core complex	GO:0005839	other intracellular components
AT1G79210	AT1G79210	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT1G79210	AT1G79210	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT1G79210	AT1G79210	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT1G79210	AT1G79210	proteasome complex	GO:0000502	other intracellular components
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to stress
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to abiotic or biotic stimulus
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to stress
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to abiotic or biotic stimulus

Gene Network Informations
Gene Network	Interact with..
Contig0754[interact with..]	FAECPM021_H10_PDNR-F FAECPM023_H07_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FAECPM021_H10_PDNR-F	1015	gb	ABI31652.1	26S proteasome regulatory particle non-ATPase subunit 12	Camellia sinensis	267	228 bits (581)	e-111	112/133 (84%)	124/133 (93%)	+2
FAECPM023_H07_PDNR-F	1019	gb	ABA40445.1	proteasome, alpha subunit-like protein	Solanum tuberosum	249	440 bits (1131)	e-121	218/243 (89%)	237/243 (97%)	+3