Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	FAECPM023_H07_PDNR-F	1019

Contig Map:

(ProjectName=FAECPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FAECPM023_H07_PDNR-F](Singleton Sequence)

FAECPM023_H07_PDNR-F 1019  bases 
GGCCGAGAGCAGCCTCCAAATTCCAGGGTGAGACATTGAAAGAGGGATAACAAAACCGCGGCCAGCAAAGTGCTCTCTAGGAGGAGATCAGAAGAAACAAGCTTAATACCAATCGGTGTTAGTCCCCAGACGACGTCATGGCCCGCTACGACCGCGCGATCACTGTCTTCTCACCAGATGGCCATCTCTTCCAGGTGGAGTACGCTCTCGAGGCCGTCCGCAAGGGAAACGCCGCCGTCGGCGTCCGTGGTATTGATACCATCGTCCTTGGAGTCGAGAAGAAGGCTACTCCAAAGTTACAGGACTCCAGAACTATGAAGAAGATCGCGAGCCTCGACAGCCACATTGCCCTAGCATGTGCGGGTCTCAAAGCCGACGCGCGTGTCCTCATCAATCGCGCCAGGATCGAATGCCAGAGCCACCGTCTTACACTTGAGGATCCGGTCACCGTCGAGTACATCACTCGATACATCGCCGGCCTGCAGCAGAAGTACACTCAGAGCGGCGGTGTTAGGCCTTTTGGCCTCTCCACGCTCATCGTCGGCTTCGATCCCTACACCGGGGCGCCGTCGCTTTACCAGACAGATCCCTCTGGAACTTTCTCGGCTTGGAAAGCGAACGCCACCGGGAGGAACTCAAATTCCATGAGAGAGTTTCTCGAGAAAAACTACAAGGAGACTTCGGGCCAGGAGACAGTCAAACTGGCTATCCGGGCGCTGCTCGAGGTTGTCGAGAGTGGGGGTAAGAACATAGAGATCGCTGTGATGACAAAAGAGGATGGTCTTCGCCAACTCGAGGAGTCGGAGATCGACGCCATTGTTGCTGAGATTGAATCAGAGAAAGCTGCAGCTGAGCTGCAAAGAAGGGACCTTCAAAGGAAACCCAACCCTAATTTCACTCTTCTTCACTGTAAGTCTTAAATTGTTTGTTTGCCTTTAAGTGAAAGTATTTATTCCCAGTGAGATCGAAGCCATCGACATTGATAGAATGTTATCATTGCCTTCCATATGTACCGAAAC

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ABA40445.1	proteasome, alpha subunit-like protein	Solanum tuberosum	249	440 bits (1131)	e-121	218/243 (89%)	237/243 (97%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[17 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	FAECPM023_H07_PDNR-F	AT5G66140	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G66140	AT5G66140	chloroplast	GO:0009507	chloroplast
AT5G66140	AT5G66140	vacuole	GO:0005773	other cytoplasmic components
AT5G66140	AT5G66140	vacuole	GO:0005773	other intracellular components
AT5G66140	AT5G66140	proteasome core complex	GO:0005839	other intracellular components
AT5G66140	AT5G66140	proteasome core complex	GO:0005839	other intracellular components
AT5G66140	AT5G66140	peptidase activity	GO:0008233	hydrolase activity
AT5G66140	AT5G66140	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT5G66140	AT5G66140	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT5G66140	AT5G66140	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT5G66140	AT5G66140	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT5G66140	AT5G66140	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT5G66140	AT5G66140	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT5G66140	AT5G66140	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT5G66140	AT5G66140	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT5G66140	AT5G66140	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT5G66140	AT5G66140	"proteasome core complex, alpha-subunit complex"	GO:0019773	other intracellular components
AT5G66140	AT5G66140	proteasome complex	GO:0000502	other intracellular components

Gene Network Informations
Gene Network	Interact with..
FAECPM023_H07_PDNR-F[interact with..]	FAECPM029_B03_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FAECPM029_B03_PDNR-F	1034	ref	XP_002313775.1	predicted protein	Populus trichocarpa	392	645 bits (1663)	0.0	329/344 (95%)	337/344 (97%)	+1