Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
454	contig05933	254

Contig Map:

(ProjectName=454
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[contig05933](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002313865.1	predicted protein	Populus trichocarpa	346	124 bits (311)	3e-27	62/67 (92%)	65/67 (97%)	+1

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[76 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	contig05933	AT2G15430	454
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	contig05933	AT2G15430	454
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	contig05933	AT2G15430	454

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	protein dimerization activity	GO:0046983	protein binding
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	protein dimerization activity	GO:0046983	protein binding
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	protein dimerization activity	GO:0046983	protein binding
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	protein dimerization activity	GO:0046983	protein binding
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components

Gene Network Informations
Gene Network	Interact with..
contig05933[interact with..]	contig00327 contig02500 FXQQ4OB02FI5QJ FXQQ4OB02GGR0W FXQQ4OB02IRNR3 FXQQ4OB02H08H7 FXQQ4OB02H5VML FXQQ4OB02JNT6W contig00740 FXQQ4OB02JMSZK contig01883 FXQQ4OB01CQD15 contig05933 contig07334 FXQQ4OB01AHH2K FXQQ4OB01BICRI FXQQ4OB02F9A23 contig02181

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
contig00327	954	gb	ACU14035.1	unknown	Glycine max	212	149 bits (376)	7e-67	74/91 (81%)	76/91 (83%)	+3
contig02500	809	gb	ACU14035.1	unknown	Glycine max	212	279 bits (713)	3e-73	147/188 (78%)	151/188 (80%)	-2
FXQQ4OB02FI5QJ	259	ref	XP_002331723.1	predicted protein	Populus trichocarpa	472	135 bits (341)	1e-30	69/85 (81%)	76/85 (89%)	+1
FXQQ4OB02GGR0W	222	ref	XP_002331723.1	predicted protein	Populus trichocarpa	472	134 bits (337)	3e-30	57/73 (78%)	68/73 (93%)	+3
FXQQ4OB02IRNR3	253	ref	XP_002331723.1	predicted protein	Populus trichocarpa	472	136 bits (343)	7e-31	69/83 (83%)	75/83 (90%)	-2
FXQQ4OB02H08H7	224	ref	XP_002315071.1	predicted protein	Populus trichocarpa	422	94.4 bits (233)	4e-18	43/49 (87%)	46/49 (93%)	+3
FXQQ4OB02H5VML	244	ref	XP_002513328.1	glyceraldehyde 3-phosphate dehydrogenase, putative	Ricinus communis	426	154 bits (390)	2e-36	75/80 (93%)	79/80 (98%)	+3
FXQQ4OB02JNT6W	224	ref	XP_002315071.1	predicted protein	Populus trichocarpa	422	94.4 bits (233)	4e-18	43/49 (87%)	46/49 (93%)	+3
contig00740	269	gb	ACF06506.1	RNA polymerase	Elaeis guineensis	145	80.5 bits (197)	5e-14	37/46 (80%)	42/46 (91%)	-3
FXQQ4OB02JMSZK	259	ref	NP_001049265.1	Os03g0196600	Oryza sativa (japonica cultivar-group)	525	128 bits (321)	2e-28	58/75 (77%)	65/75 (86%)	-1
contig01883	426			[No hits found]
FXQQ4OB01CQD15	265	ref	NP_001044390.1	Os01g0772200	Oryza sativa (japonica cultivar-group)	117	108 bits (270)	2e-22	49/57 (85%)	52/57 (91%)	+3
contig05933	254	ref	XP_002313865.1	predicted protein	Populus trichocarpa	346	124 bits (311)	3e-27	62/67 (92%)	65/67 (97%)	+1
contig07334	242	gb	AAW22924.1	RNA polymerase II second largest subunit	Drimys winteri	565	164 bits (415)	3e-39	77/77 (100%)	77/77 (100%)	-1
FXQQ4OB01AHH2K	250	gb	AAY85216.1	RNA polymerase II second largest subunit	Hibbertia scandens	873	84.0 bits (206)	2e-24	42/42 (100%)	42/42 (100%)	+1
FXQQ4OB01BICRI	216	gb	AAZ08467.1	RNA polymerase II second largest subunit	Linanthus californicus	733	149 bits (376)	9e-35	70/71 (98%)	71/71 (100%)	-2
FXQQ4OB02F9A23	226	ref	XP_002519060.1	DNA-directed RNA polymerase II subunit, putative	Ricinus communis	1194	162 bits (409)	1e-38	75/75 (100%)	75/75 (100%)	+2
contig02181	323			[No hits found]