Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
454	FXQQ4OB02IHIZD	235

Contig Map:

(ProjectName=454
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FXQQ4OB02IHIZD](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002521319.1	Exportin-T, putative	Ricinus communis	988	69.3 bits (168)	5e-15	35/55 (63%)	45/55 (81%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[10 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03013	RNA transport	[PATH:ath03013]	FXQQ4OB02IHIZD	AT1G72560	454

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G72560	AT1G72560	"nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity"	GO:0015932	transporter activity
AT1G72560	AT1G72560	tRNA binding	GO:0000049	DNA or RNA binding
AT1G72560	AT1G72560	tRNA export from nucleus	GO:0006409	transport
AT1G72560	AT1G72560	tRNA export from nucleus	GO:0006409	DNA or RNA metabolism
AT1G72560	AT1G72560	tRNA export from nucleus	GO:0006409	transport
AT1G72560	AT1G72560	tRNA export from nucleus	GO:0006409	other cellular processes
AT1G72560	AT1G72560	tRNA export from nucleus	GO:0006409	DNA or RNA metabolism
AT1G72560	AT1G72560	tRNA export from nucleus	GO:0006409	other cellular processes
AT1G72560	AT1G72560	flower development	GO:0009908	developmental processes
AT1G72560	AT1G72560	meristem initiation	GO:0010014	developmental processes

Gene Network Informations
Gene Network	Interact with..
FXQQ4OB02IHIZD[interact with..]	contig01200 FXQQ4OB01DEKWK FXQQ4OB02JMSZK contig03589 FXQQ4OB01BHKMO FXQQ4OB01BHWUY FXQQ4OB01DHGHG FXQQ4OB02HA5EK FXQQ4OB02IHIZD

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
contig01200	426	ref	NP_001067233.1	Os12g0607100	Oryza sativa (japonica cultivar-group)	464	69.3 bits (168)	1e-10	31/35 (88%)	32/35 (91%)	+2
FXQQ4OB01DEKWK	244	ref	XP_002326595.1	predicted protein	Populus trichocarpa	464	147 bits (370)	5e-34	70/79 (88%)	76/79 (96%)	+3
FXQQ4OB02JMSZK	259	ref	NP_001049265.1	Os03g0196600	Oryza sativa (japonica cultivar-group)	525	128 bits (321)	2e-28	58/75 (77%)	65/75 (86%)	-1
contig03589	266	emb	CAO15322.1	unnamed protein product	Vitis vinifera	278	62.4 bits (150)	2e-08	29/43 (67%)	32/43 (74%)	+2
FXQQ4OB01BHKMO	251	ref	XP_002521319.1	Exportin-T, putative	Ricinus communis	988	123 bits (309)	6e-27	56/78 (71%)	69/78 (88%)	+3
FXQQ4OB01BHWUY	230	ref	NP_001060255.1	Os07g0613300	Oryza sativa (japonica cultivar-group)	980	76.3 bits (186)	1e-12	38/57 (66%)	45/57 (78%), Gaps = 1/57 (1%)	+1
FXQQ4OB01DHGHG	237	ref	XP_002304132.1	predicted protein	Populus trichocarpa	994	111 bits (278)	2e-23	51/72 (70%)	57/72 (79%)	+2
FXQQ4OB02HA5EK	244	ref	XP_002521319.1	Exportin-T, putative	Ricinus communis	988	62.4 bits (150)	7e-18	29/49 (59%)	39/49 (79%), Gaps = 1/49 (2%)	-2
FXQQ4OB02IHIZD	235	ref	XP_002521319.1	Exportin-T, putative	Ricinus communis	988	69.3 bits (168)	5e-15	35/55 (63%)	45/55 (81%)	+1