Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
454	FXQQ4OB01EST7C	230

Contig Map:

(ProjectName=454
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FXQQ4OB01EST7C](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002517812.1	DNA-directed RNA polymerase II 13.6 kD polypeptide, putative	Ricinus communis	156	102 bits (255)	1e-20	47/54 (87%)	51/54 (94%)	+3

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[48 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	FXQQ4OB01EST7C	AT3G52090	454
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	FXQQ4OB01EST7C	AT3G52090	454
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	FXQQ4OB01EST7C	AT3G52090	454

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT3G52090	AT3G52090	DNA binding	GO:0003677	DNA or RNA binding
AT3G52090	AT3G52090	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G52090	AT3G52090	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT3G52090	AT3G52090	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT3G52090	AT3G52090	DNA binding	GO:0003677	DNA or RNA binding
AT3G52090	AT3G52090	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G52090	AT3G52090	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT3G52090	AT3G52090	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT3G52090	AT3G52090	DNA binding	GO:0003677	DNA or RNA binding
AT3G52090	AT3G52090	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G52090	AT3G52090	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT3G52090	AT3G52090	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT3G52090	AT3G52090	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT3G52090	AT3G52090	DNA binding	GO:0003677	DNA or RNA binding
AT3G52090	AT3G52090	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G52090	AT3G52090	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G52090	AT3G52090	transcription	GO:0006350	transcription
AT3G52090	AT3G52090	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT3G52090	AT3G52090	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT3G52090	AT3G52090	transcription	GO:0006350	transcription

Gene Network Informations
Gene Network	Interact with..
FXQQ4OB01EST7C[interact with..]	contig00740 contig01883 FXQQ4OB01CQD15 contig05933 contig00191 contig01148 FXQQ4OB01C0I5E FXQQ4OB02F3GCS FXQQ4OB02G8RIK contig04256 contig06759 FXQQ4OB01BYSRM FXQQ4OB01DEIMM contig07334 FXQQ4OB01AHH2K FXQQ4OB01BICRI FXQQ4OB02F9A23

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
contig00740	269	gb	ACF06506.1	RNA polymerase	Elaeis guineensis	145	80.5 bits (197)	5e-14	37/46 (80%)	42/46 (91%)	-3
contig01883	426			[No hits found]
FXQQ4OB01CQD15	265	ref	NP_001044390.1	Os01g0772200	Oryza sativa (japonica cultivar-group)	117	108 bits (270)	2e-22	49/57 (85%)	52/57 (91%)	+3
contig05933	254	ref	XP_002313865.1	predicted protein	Populus trichocarpa	346	124 bits (311)	3e-27	62/67 (92%)	65/67 (97%)	+1
contig00191	654	gb	ABK56834.1	RPS3	Cymbidium hybrid cultivar	261	291 bits (744)	4e-77	142/147 (96%)	145/147 (98%)	+1
contig01148	279	gb	ABK56834.1	RPS3	Cymbidium hybrid cultivar	261	96.3 bits (238)	1e-18	47/51 (92%)	48/51 (94%)	+3
FXQQ4OB01C0I5E	258	gb	ABK56834.1	RPS3	Cymbidium hybrid cultivar	261	104 bits (260)	3e-21	50/51 (98%)	51/51 (100%)	+3
FXQQ4OB02F3GCS	260	gb	ABK56834.1	RPS3	Cymbidium hybrid cultivar	261	105 bits (261)	2e-21	51/51 (100%)	51/51 (100%)	+2
FXQQ4OB02G8RIK	237	gb	ABK56834.1	RPS3	Cymbidium hybrid cultivar	261	94.7 bits (234)	3e-18	45/45 (100%)	45/45 (100%)	-1
contig04256	302	gb	ACF06443.1	DNA-directed RNA polymerases II 24 kDa polypeptide	Elaeis guineensis	204	125 bits (313)	2e-27	55/85 (64%)	73/85 (85%)	+1
contig06759	385	ref	XP_001758465.1	predicted protein	Physcomitrella patens subsp. patens	208	96.7 bits (239)	2e-25	47/57 (82%)	52/57 (91%)	+2
FXQQ4OB01BYSRM	250	gb	ACF06443.1	DNA-directed RNA polymerases II 24 kDa polypeptide	Elaeis guineensis	204	77.8 bits (190)	3e-13	34/64 (53%)	52/64 (81%)	+3
FXQQ4OB01DEIMM	251	ref	XP_001758465.1	predicted protein	Physcomitrella patens subsp. patens	208	75.1 bits (183)	2e-12	34/48 (70%)	41/48 (85%)	+1
contig07334	242	gb	AAW22924.1	RNA polymerase II second largest subunit	Drimys winteri	565	164 bits (415)	3e-39	77/77 (100%)	77/77 (100%)	-1
FXQQ4OB01AHH2K	250	gb	AAY85216.1	RNA polymerase II second largest subunit	Hibbertia scandens	873	84.0 bits (206)	2e-24	42/42 (100%)	42/42 (100%)	+1
FXQQ4OB01BICRI	216	gb	AAZ08467.1	RNA polymerase II second largest subunit	Linanthus californicus	733	149 bits (376)	9e-35	70/71 (98%)	71/71 (100%)	-2
FXQQ4OB02F9A23	226	ref	XP_002519060.1	DNA-directed RNA polymerase II subunit, putative	Ricinus communis	1194	162 bits (409)	1e-38	75/75 (100%)	75/75 (100%)	+2