Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
454	FXQQ4OB01BYSRM	250

Contig Map:

(ProjectName=454
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FXQQ4OB01BYSRM](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACF06443.1	DNA-directed RNA polymerases II 24 kDa polypeptide	Elaeis guineensis	204	77.8 bits (190)	3e-13	34/64 (53%)	52/64 (81%)	+3

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[40 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	FXQQ4OB01BYSRM	AT3G22320	454
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	FXQQ4OB01BYSRM	AT3G22320	454
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	FXQQ4OB01BYSRM	AT3G22320	454

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G22320	AT3G22320	DNA binding	GO:0003677	DNA or RNA binding
AT3G22320	AT3G22320	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G22320	AT3G22320	transcription	GO:0006350	transcription
AT3G22320	AT3G22320	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT3G22320	AT3G22320	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT3G22320	AT3G22320	DNA binding	GO:0003677	DNA or RNA binding
AT3G22320	AT3G22320	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G22320	AT3G22320	transcription	GO:0006350	transcription
AT3G22320	AT3G22320	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT3G22320	AT3G22320	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT3G22320	AT3G22320	DNA binding	GO:0003677	DNA or RNA binding
AT3G22320	AT3G22320	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G22320	AT3G22320	transcription	GO:0006350	transcription
AT3G22320	AT3G22320	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT3G22320	AT3G22320	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT3G22320	AT3G22320	DNA binding	GO:0003677	DNA or RNA binding
AT3G22320	AT3G22320	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G22320	AT3G22320	transcription	GO:0006350	transcription
AT3G22320	AT3G22320	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT3G22320	AT3G22320	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT3G22320	AT3G22320	DNA binding	GO:0003677	DNA or RNA binding
AT3G22320	AT3G22320	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G22320	AT3G22320	transcription	GO:0006350	transcription
AT3G22320	AT3G22320	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT3G22320	AT3G22320	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT3G22320	AT3G22320	DNA binding	GO:0003677	DNA or RNA binding
AT3G22320	AT3G22320	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G22320	AT3G22320	transcription	GO:0006350	transcription
AT3G22320	AT3G22320	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT3G22320	AT3G22320	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT3G22320	AT3G22320	DNA binding	GO:0003677	DNA or RNA binding
AT3G22320	AT3G22320	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G22320	AT3G22320	transcription	GO:0006350	transcription
AT3G22320	AT3G22320	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT3G22320	AT3G22320	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT3G22320	AT3G22320	DNA binding	GO:0003677	DNA or RNA binding
AT3G22320	AT3G22320	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT3G22320	AT3G22320	transcription	GO:0006350	transcription
AT3G22320	AT3G22320	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT3G22320	AT3G22320	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components

Gene Network Informations
Gene Network	Interact with..
FXQQ4OB01BYSRM[interact with..]	contig05936 contig00346 FXQQ4OB01BQEWS FXQQ4OB01EQILZ contig03887 FXQQ4OB02JZF9A contig07628 FXQQ4OB01ANG32 FXQQ4OB01C3LZN FXQQ4OB02FVW2V contig00740 contig01883 FXQQ4OB01CQD15 contig05933 contig05859 FXQQ4OB01B8XP9 FXQQ4OB01CFUFK FXQQ4OB01DM4NL FXQQ4OB02FUNJA contig04256 contig06759 FXQQ4OB01BYSRM FXQQ4OB01DEIMM contig04755 FXQQ4OB02FT5NV contig03445 FXQQ4OB01AGO7S contig04378

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
contig05936	253	ref	NP_001148175.1	DNA-directed RNA polymerase II 8.2 kDa polypeptide	Zea mays	242	63.5 bits (153)	7e-09	32/52 (61%)	36/52 (69%)	+1
contig00346	1536	ref	XP_002512790.1	glyceraldehyde 3-phosphate dehydrogenase, putative	Ricinus communis	404	580 bits (1495)	e-178	293/350 (83%)	304/350 (86%)	+1
FXQQ4OB01BQEWS	177	ref	XP_002321065.1	predicted protein	Populus trichocarpa	404	51.6 bits (122)	1e-12	26/26 (100%)	26/26 (100%)	+3
FXQQ4OB01EQILZ	277	dbj	BAH57068.1	AT1G12900	Arabidopsis thaliana	350	117 bits (294)	3e-25	62/75 (82%)	62/75 (82%)	+1
contig03887	396	ref	XP_002531208.1	syntaxin, putative	Ricinus communis	147	86.7 bits (213)	8e-16	39/46 (84%)	44/46 (95%)	+3
FXQQ4OB02JZF9A	243	gb	ABK23110.1	unknown	Picea sitchensis	233	85.5 bits (210)	2e-15	39/51 (76%)	46/51 (90%)	+3
contig07628	224	ref	NP_001064952.1	Os10g0495600	Oryza sativa (japonica cultivar-group)	1127	130 bits (327)	5e-29	61/74 (82%)	70/74 (94%)	-1
FXQQ4OB01ANG32	238	ref	NP_001064952.1	Os10g0495600	Oryza sativa (japonica cultivar-group)	1127	73.6 bits (179)	6e-12	35/50 (70%)	43/50 (86%)	-3
FXQQ4OB01C3LZN	262	emb	CAO42796.1	unnamed protein product	Vitis vinifera	752	117 bits (292)	5e-25	57/86 (66%)	64/86 (74%)	-3
FXQQ4OB02FVW2V	186	emb	CAO42796.1	unnamed protein product	Vitis vinifera	752	89.7 bits (221)	9e-17	38/60 (63%)	54/60 (90%)	+3
contig00740	269	gb	ACF06506.1	RNA polymerase	Elaeis guineensis	145	80.5 bits (197)	5e-14	37/46 (80%)	42/46 (91%)	-3
contig01883	426			[No hits found]
FXQQ4OB01CQD15	265	ref	NP_001044390.1	Os01g0772200	Oryza sativa (japonica cultivar-group)	117	108 bits (270)	2e-22	49/57 (85%)	52/57 (91%)	+3
contig05933	254	ref	XP_002313865.1	predicted protein	Populus trichocarpa	346	124 bits (311)	3e-27	62/67 (92%)	65/67 (97%)	+1
contig05859	252	ref	NP_001067017.1	Os12g0560400	Oryza sativa (japonica cultivar-group)	104	91.3 bits (225)	3e-17	38/44 (86%)	42/44 (95%)	+2
FXQQ4OB01B8XP9	234	ref	XP_002312337.1	predicted protein	Populus trichocarpa	114	105 bits (262)	2e-21	45/66 (68%)	56/66 (84%)	+2
FXQQ4OB01CFUFK	235	ref	NP_188323.1	NRPB9A; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding		114	76.6 bits (187)	8e-13	32/48 (66%)	40/48 (83%)	+3
FXQQ4OB01DM4NL	248	ref	XP_002276956.1	PREDICTED: hypothetical protein	Vitis vinifera	114	61.2 bits (147)	3e-08	29/44 (65%)	33/44 (75%)	+2
FXQQ4OB02FUNJA	256	ref	XP_002519205.1	DNA-directed RNA polymerase II, putative	Ricinus communis	266	76.6 bits (187)	8e-13	38/76 (50%)	47/76 (61%)	-2
contig04256	302	gb	ACF06443.1	DNA-directed RNA polymerases II 24 kDa polypeptide	Elaeis guineensis	204	125 bits (313)	2e-27	55/85 (64%)	73/85 (85%)	+1
contig06759	385	ref	XP_001758465.1	predicted protein	Physcomitrella patens subsp. patens	208	96.7 bits (239)	2e-25	47/57 (82%)	52/57 (91%)	+2
FXQQ4OB01BYSRM	250	gb	ACF06443.1	DNA-directed RNA polymerases II 24 kDa polypeptide	Elaeis guineensis	204	77.8 bits (190)	3e-13	34/64 (53%)	52/64 (81%)	+3
FXQQ4OB01DEIMM	251	ref	XP_001758465.1	predicted protein	Physcomitrella patens subsp. patens	208	75.1 bits (183)	2e-12	34/48 (70%)	41/48 (85%)	+1
contig04755	273	ref	XP_002526734.1	DNA-directed RNA polymerase I largest subunit, putative	Ricinus communis	1686	92.8 bits (229)	1e-17	53/89 (59%)	56/89 (62%)	-3
FXQQ4OB02FT5NV	228	dbj	BAF19977.2	Os06g0612200	Oryza sativa Japonica Group	237	109 bits (273)	8e-23	53/75 (70%)	63/75 (84%)	+3
contig03445	407	ref	XP_002510834.1	DNA-directed RNA polymerase subunit rpb6, putative	Ricinus communis	124	138 bits (347)	2e-31	66/67 (98%)	67/67 (100%)	+3
FXQQ4OB01AGO7S	174	ref	XP_002520498.1	DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative	Ricinus communis	176	84.0 bits (206)	5e-15	41/43 (95%)	41/43 (95%)	-2
contig04378	252	gb	AAS79695.1	RNA polymerase III large subunit	Cycas revoluta	548	162 bits (409)	1e-38	78/84 (92%)	80/84 (95%)	+1