Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
454	FXQQ4OB01B6MLH	260

Contig Map:

(ProjectName=454
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FXQQ4OB01B6MLH](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002300334.1	predicted protein	Populus trichocarpa	1088	121 bits (304)	9e-36	57/61 (93%)	60/61 (98%)	+1

KEGG Pathway	GO
NoContigFind[2 Pathway]	NoContigFind[42 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	04120	Ubiquitin mediated proteolysis	[PATH:ath04120]	FXQQ4OB01B6MLH	AT4G05420	454
Genetic Information Processing	Replication and Repair	03420	Nucleotide excision repair	[PATH:ath03420]	FXQQ4OB01B6MLH	AT4G05420	454

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G05420	AT4G05420	nucleus	GO:0005634	nucleus
AT4G05420	AT4G05420	nucleus	GO:0005634	nucleus
AT4G05420	AT4G05420	DNA binding	GO:0003677	DNA or RNA binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	negative regulation of transcription	GO:0016481	transcription
AT4G05420	AT4G05420	negative regulation of transcription	GO:0016481	other cellular processes
AT4G05420	AT4G05420	negative regulation of transcription	GO:0016481	other metabolic processes
AT4G05420	AT4G05420	negative regulation of photomorphogenesis	GO:0010100	developmental processes
AT4G05420	AT4G05420	negative regulation of photomorphogenesis	GO:0010100	response to abiotic or biotic stimulus
AT4G05420	AT4G05420	nucleus	GO:0005634	nucleus
AT4G05420	AT4G05420	nucleus	GO:0005634	nucleus
AT4G05420	AT4G05420	DNA binding	GO:0003677	DNA or RNA binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	protein binding	GO:0005515	protein binding
AT4G05420	AT4G05420	negative regulation of transcription	GO:0016481	transcription
AT4G05420	AT4G05420	negative regulation of transcription	GO:0016481	other cellular processes
AT4G05420	AT4G05420	negative regulation of transcription	GO:0016481	other metabolic processes
AT4G05420	AT4G05420	negative regulation of photomorphogenesis	GO:0010100	developmental processes
AT4G05420	AT4G05420	negative regulation of photomorphogenesis	GO:0010100	response to abiotic or biotic stimulus

Gene Network Informations
Gene Network	Interact with..
FXQQ4OB01B6MLH[interact with..]	FXQQ4OB02JMSZK FXQQ4OB01E2C78 contig07069 FXQQ4OB01D07T1 contig03439 contig07711 FXQQ4OB01D3UUJ FXQQ4OB02FH71P FXQQ4OB01B6MLH FXQQ4OB02G19YA contig05449 FXQQ4OB01EPVD9

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FXQQ4OB02JMSZK	259	ref	NP_001049265.1	Os03g0196600	Oryza sativa (japonica cultivar-group)	525	128 bits (321)	2e-28	58/75 (77%)	65/75 (86%)	-1
FXQQ4OB01E2C78	249	ref	XP_002304718.1	predicted protein	Populus trichocarpa	349	120 bits (300)	6e-26	52/67 (77%)	56/67 (83%)	-1
contig07069	386	gb	AAC98912.1	COP1 homolog	Lycopersicon esculentum	677	241 bits (615)	2e-62	112/128 (87%)	119/128 (92%)	-3
FXQQ4OB01D07T1	246	gb	AAC98912.1	COP1 homolog	Lycopersicon esculentum	677	57.4 bits (137)	7e-12	26/26 (100%)	26/26 (100%)	-2
contig03439	265	ref	NP_001044115.1	Os01g0725800	Oryza sativa (japonica cultivar-group)	809	82.8 bits (203)	1e-14	35/54 (64%)	47/54 (87%)	+2
contig07711	130	ref	NP_683567.1	SPA3 (SPA1-RELATED 3); protein binding / signal transducer	Arabidopsis thaliana	837	72.8 bits (177)	1e-11	34/43 (79%)	37/43 (86%)	-1
FXQQ4OB01D3UUJ	208	ref	XP_002329131.1	predicted protein	Populus trichocarpa	857	82.8 bits (203)	1e-14	38/69 (55%)	49/69 (71%)	-2
FXQQ4OB02FH71P	257	ref	XP_002329131.1	predicted protein	Populus trichocarpa	857	70.5 bits (171)	9e-13	35/58 (60%)	40/58 (68%)	+2
FXQQ4OB01B6MLH	260	ref	XP_002300334.1	predicted protein	Populus trichocarpa	1088	121 bits (304)	9e-36	57/61 (93%)	60/61 (98%)	+1
FXQQ4OB02G19YA	259	ref	XP_002300334.1	predicted protein	Populus trichocarpa	1088	146 bits (369)	2e-34	72/75 (96%)	74/75 (98%)	+1
contig05449	494	ref	NP_001041766.1	Os01g0104600	Oryza sativa (japonica cultivar-group)	511	155 bits (392)	1e-36	73/88 (82%)	81/88 (92%)	-1
FXQQ4OB01EPVD9	233	ref	NP_001147932.1	light-mediated development protein DET1	Zea mays	509	112 bits (280)	1e-23	54/77 (70%)	64/77 (83%)	-1