Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig1072	620

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig1072):
FPTEVCPM057_F07_PDNR-F:
FPTEVCPM071_E08_PDNR-F:

Sequences View:[Contig1072](Contig Seguence)

Sequences View:[Contig1072](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACJ02349.1	60S ribosomal protein L35a	Vernicia fordii	112	221 bits (563)	3e-56	103/112 (91%)	109/112 (97%)	+2

KEGG Pathway	GO
Contig1072[1 Pathway]	Contig1072[14 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	Contig1072	AT1G74270	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G74270	AT1G74270	structural constituent of ribosome	GO:0003735	structural molecule activity
AT1G74270	AT1G74270	translation	GO:0006412	protein metabolism
AT1G74270	AT1G74270	translation	GO:0006412	other cellular processes
AT1G74270	AT1G74270	translation	GO:0006412	other metabolic processes
AT1G74270	AT1G74270	ribosome	GO:0005840	ribosome
AT1G74270	AT1G74270	structural constituent of ribosome	GO:0003735	structural molecule activity
AT1G74270	AT1G74270	translation	GO:0006412	protein metabolism
AT1G74270	AT1G74270	translation	GO:0006412	other cellular processes
AT1G74270	AT1G74270	translation	GO:0006412	other metabolic processes
AT1G74270	AT1G74270	ribosome biogenesis	GO:0042254	cell organization and biogenesis
AT1G74270	AT1G74270	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT1G74270	AT1G74270	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT1G74270	AT1G74270	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT1G74270	AT1G74270	cytosolic large ribosomal subunit	GO:0022625	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig1072[interact with..]	Contig0860 FPTEVCPM040_E01_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0860	1378	ref	XP_002524302.1	60S ribosomal protein L3, putative	Ricinus communis	389	701 bits (1810)	0.0	334/381 (87%)	358/381 (93%)	+3
FPTEVCPM040_E01_PDNR-F	1018	gb	ACF06589.1	ribosomal protein	Elaeis guineensis	182	308 bits (790)	5e-82	154/183 (84%)	163/183 (89%)	+2