Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPEAECP	FPEAECP014_F12_PDNR-F	1033

Contig Map:

(ProjectName=FPEAECP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPEAECP014_F12_PDNR-F](Singleton Sequence)

FPEAECP014_F12_PDNR-F 1033  bases 
AACGGCGGCTATGCCCGGGATTCGGCCTTACGGCCGGGGGCCGCCCTTTTGAAACTCCCCACCGAAATCCCTGAGGCCCTCGACGTCAAAGAAGAGGTTAGTTGCCGCGGGAGCGAGCAAGACATCGACGAGAACGGCGGCGCGTGAAGGCGGAAGAGTTTGTGAGAGCAGTGGCTATCGAGAAGGAGTGTAAACCTTTAACATACTGTAAATCCACCGCGATCCTGTTCTCTTATCGCGGGAGTTTTAGGTTTTTTAGCTGAAAATGGACGGGGCGGATGACTACATGATGGAGGTGGACGATGAGGAGGAAATTACCCAGGAGGACGCTTGGGCGGTGATCAGCGCCTACTTCGAAGACAAGGGTCTTGTGAGGCAGCAGCTCGACTCGTTCGACGAGTTCATCCAGAACACTATGCAGGAGATTGTGGACGAGTCTGCTGACATCGAGATTCGGCCTGAGTCGCAACATAATCCTGGCCGCCAATCGGACTTCGTCGAGACGATTTACAAAATTAGCTTTGGTCAAATATATTTGAGTAGACCAATGATGACAGAGTCAGATGGAGAAACTGCTACATTATTTCCAAAGGCTGCAAGGTTAAGAAATCTAACTTATTCAACACCTTTGTATGTGGATGTCACTAAAAAGATTATAAAGAAGGGGCATGATTGTGAAGAAGTTACCGAGACGCAGGAGTTCACAAAAGTTTTCATTGGAAAGGTTCCCGTTATGTTAAGGTCTACTTATTGCACACTTTTTCAAAATTCTGAAAAGGATTTGACAGAATTGGGAGAATGCCCTTATGATCAAGGTGGATATTTCATTATAAATGGTAGTGAGAAGGTTTTGATTGCCCAAGAAAAGATGAGCACCAACCATGTTTATGTATTTAAGAAAACGGCAACCAAATAAATTTGCTTATGTTGCTGAAGTCCGGTCTATGGCTGAGAGCCAGAACAGACCGGCAAGCAGCATGTTTGTGCGATGCTGTCAAGACTAGCGCCAAAGGAGGAAATTCTGGGCAATATA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
emb	CAO69734.1	unnamed protein product	Vitis vinifera	1220	381 bits (978)	e-116	186/196 (94%)	194/196 (98%)	+2

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[32 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	FPEAECP014_F12_PDNR-F	AT4G21710	FPEAECP
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	FPEAECP014_F12_PDNR-F	AT4G21710	FPEAECP
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	FPEAECP014_F12_PDNR-F	AT4G21710	FPEAECP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes

Gene Network Informations
Gene Network	Interact with..
FPEAECP014_F12_PDNR-F[interact with..]	Contig0512 Contig0005 Contig0012 Contig0377 FPEAECP012_D06_PDNR-F FPEAECP036_H12_PDNR-F FPEAECP006_C07_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0512	1260	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	397 bits (1021)	e-108	197/265 (74%)	222/265 (83%), Gaps = 7/265 (2%)	+2
Contig0005	1190	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	470 bits (1210)	e-134	237/265 (89%)	244/265 (92%), Gaps = 1/265 (0%)	+3
Contig0012	1414	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	691 bits (1784)	0.0	350/388 (90%)	358/388 (92%), Gaps = 1/388 (0%)	+2
Contig0377	1211	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	494 bits (1271)	e-137	252/287 (87%)	259/287 (90%), Gaps = 1/287 (0%)	-1
FPEAECP012_D06_PDNR-F	492	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	104 bits (259)	4e-21	51/57 (89%)	51/57 (89%), Gaps = 1/57 (1%)	+3
FPEAECP036_H12_PDNR-F	441	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	101 bits (251)	3e-20	49/55 (89%)	49/55 (89%), Gaps = 1/55 (1%)	+3
FPEAECP006_C07_PDNR-F	639	ref	XP_002267800.1	PREDICTED: hypothetical protein	Vitis vinifera	51	108 bits (270)	4e-22	49/51 (96%)	49/51 (96%)	+2