Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPEAECP	Contig0351	593

Contig Map:

(ProjectName=FPEAECP SequenceName=Contig0351):
FPEAECP020_F06_PDNR-F:
PEAECP044_F07_PDNR-F:

Sequences View:[Contig0351](Contig Seguence)

Sequences View:[Contig0351](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	AAT08714.1	ribosomal protein L18A	Hyacinthus orientalis	178	169 bits (428)	1e-40	81/86 (94%)	83/86 (96%)	+2

KEGG Pathway	GO
Contig0351[1 Pathway]	Contig0351[28 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	Contig0351	AT2G34480	FPEAECP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G34480	AT2G34480	ribosome	GO:0005840	ribosome
AT2G34480	AT2G34480	structural constituent of ribosome	GO:0003735	structural molecule activity
AT2G34480	AT2G34480	translation	GO:0006412	protein metabolism
AT2G34480	AT2G34480	translation	GO:0006412	other cellular processes
AT2G34480	AT2G34480	translation	GO:0006412	other metabolic processes
AT2G34480	AT2G34480	ribosome biogenesis	GO:0042254	cell organization and biogenesis
AT2G34480	AT2G34480	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT2G34480	AT2G34480	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT2G34480	AT2G34480	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT2G34480	AT2G34480	cytosolic large ribosomal subunit	GO:0022625	other intracellular components
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	cytosol
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	ribosome
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	other intracellular components
AT2G34480	AT2G34480	plasma membrane	GO:0005886	plasma membrane
AT2G34480	AT2G34480	plasma membrane	GO:0005886	plasma membrane
AT2G34480	AT2G34480	structural constituent of ribosome	GO:0003735	structural molecule activity
AT2G34480	AT2G34480	translation	GO:0006412	protein metabolism
AT2G34480	AT2G34480	translation	GO:0006412	other cellular processes
AT2G34480	AT2G34480	translation	GO:0006412	other metabolic processes
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	cytosol
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	cytosol
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	ribosome
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	ribosome
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	other intracellular components
AT2G34480	AT2G34480	cytosolic ribosome	GO:0022626	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig0351[interact with..]	FPEAECP026_D12_PDNR-F FPEAECP005_G01_PDNR-F Contig0351 FPEAECP036_D05_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPEAECP026_D12_PDNR-F	818	gb	ACG47565.1	60S ribosomal protein L17	Zea mays	171	293 bits (749)	2e-77	144/152 (94%)	147/152 (96%)	+3
FPEAECP005_G01_PDNR-F	764	gb	ABA40430.1	ribosomal protein L27a-like protein	Solanum tuberosum	148	259 bits (663)	1e-67	124/149 (83%)	129/149 (86%)	+3
Contig0351	593	gb	AAT08714.1	ribosomal protein L18A	Hyacinthus orientalis	178	169 bits (428)	1e-40	81/86 (94%)	83/86 (96%)	+2
FPEAECP036_D05_PDNR-F	875	gb	ACF06561.1	ribosomal protein L18a	Elaeis guineensis	178	350 bits (897)	1e-94	166/178 (93%)	173/178 (97%)	+2