Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEVCP	FEVCPM013_F08_PDNRF	1150

Contig Map:

(ProjectName=FEVCP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FEVCPM013_F08_PDNRF](Singleton Sequence)

FEVCPM013_F08_PDNRF 1150  bases 
GCAGCTTCAAGGTATACACAACGTGATCATAGTACTAGCTTACGCCATAGTGAAAGCGGGATGGTGGATCAGGTTTTATTAACTACAAATGCTGATGGCCTGAGGTTTGTGAAAGTTAGAATGAGATCCGTCCGTATTCCTCAGATTGGAGATAAATTTAGTAGCAGGCATGGTCAAAAGGGAACTGTTGGTATGACTTATACTCAGGAAGATATGCCATGGACTGTTGAAGGCATTACGCCTGATATTATTGTGAATCCACATGCCATTCCCTCTCGGATGACTATCGGTCAACTTATCGAGTGTATCATGGGAAAGGTTGCTGCCCATATGGGGAAAGAAGGCGATGCCACTCCGTTCACAGATGTCACGGTCGATAATATCAGCAAAGCTCTGCATAAATGTGGATATCAGATGCGTGGATTTGAAACGATGTACAACGGGCACACTGGTCGAAAATTGAGCGCCATGATATTCCTCGGCCCCACCTATTATCAGCGCCTTAAACACATGGTGGATGACAAGATCCACTCGAGAGGGCGTGGCCCCGTACAGATCCTTACGAGGCAGCCTGCTGAAGGCCGTTCTCGCGATGGTGGTTTGCGTTTCGGAGAGATGGAACGAGACTGCATGATTGCTCACGGCGCCGCTCACTTCCTTAAGGAGAGGTTGTTCGATCAAAGCGATGCATATAGAGTTCATGTCTGCGAGAGATGCGGGCTCATAGCCATCGCCAATCTGAAGAAGAATTCTTTCGAGTGTAGAGGTTGCAAGACAAGACTGACATTGTTCAAGTGCACATACCATACGCCTGCAAGCTGCTCTTCCAGAGCTCATGTCTATGGCCATTGCCCCAGAATGCTCACCAAGAAGAAAAGTTCCCAGAAACGAAGAAAGATTCTGAGTGAGAGATTCCCCTGATGTTTGCACTATTTGAATGAAGATTCTAATGCATAACTTATGATATGGCCTTCTTCTGCTCTTTAATCAGTGCAGTGTCTTTATCTAAATCTGATGTTGCAATGGCTTTTGTTCTGGGTCCTGATTTGTGATGACAATAAAATGAATAGTGATTAGCTCTAATGCTGCTGAGTGTGATTGTAGAAATTAATACAACTATCGTCTTATTATACTTCGAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
emb	CAO69734.1	unnamed protein product	Vitis vinifera	1220	536 bits (1382)	e-150	265/301 (88%)	274/301 (91%), Gaps = 3/301 (0%)	+1

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[32 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	FEVCPM013_F08_PDNRF	AT4G21710	FEVCP
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	FEVCPM013_F08_PDNRF	AT4G21710	FEVCP
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	FEVCPM013_F08_PDNRF	AT4G21710	FEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes

Gene Network Informations
Gene Network	Interact with..
FEVCPM013_F08_PDNRF[interact with..]	Contig0564 FEVCPS032_F08_PDNR-F Contig0748 FEVCPContig0097 FEVCPContig0404 FEVCPS007_A05_PDNRF FEVCPM035_E04_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0564	960	gb	AAB08874.1	malate dehydrogenase	Vitis vinifera	640	373 bits (957)	e-110	187/232 (80%)	200/232 (86%)	+2
FEVCPContig0564	475			[No hits found]
FEVCPS032_F08_PDNR-F	277	sp	P34105.3	MAOX_POPTR RecName: Full=NADP-dependent malic enzyme; Short=NADP-ME		591	143 bits (360)	7e-33	69/92 (75%)	80/92 (86%), Gaps = 6/92 (6%)	+1
Contig0748	1010	gb	AAF34134.1	high molecular weight heat shock protein	Malus x domestica	650	421 bits (1083)	e-116	213/241 (88%)	220/241 (91%), Gaps = 3/241 (1%)	+1
FEVCPContig0097	2299	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	1176 bits (3043)	0.0	594/648 (91%)	612/648 (94%), Gaps = 1/648 (0%)	+2
FEVCPContig0404	342	ref	XP_002316294.1	predicted protein	Populus trichocarpa	648	87.0 bits (214)	6e-16	42/48 (87%)	44/48 (91%), Gaps = 1/48 (2%)	+2
FEVCPS007_A05_PDNRF	519	gb	AAF34134.1	high molecular weight heat shock protein	Malus x domestica	650	186 bits (472)	7e-46	95/120 (79%)	99/120 (82%), Gaps = 3/120 (2%)	+3
FEVCPM035_E04_PDNR-F	675	ref	NP_001149930.1	LOC100283558	Zea mays	142	221 bits (562)	5e-56	106/142 (74%)	118/142 (83%)	+3