Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEVCP	FEVCPM035_E04_PDNR-F	675

Contig Map:

(ProjectName=FEVCP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FEVCPM035_E04_PDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_001149930.1	LOC100283558	Zea mays	142	221 bits (562)	5e-56	106/142 (74%)	118/142 (83%)	+3

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[56 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	FEVCPM035_E04_PDNR-F	AT5G51940	FEVCP
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	FEVCPM035_E04_PDNR-F	AT5G51940	FEVCP
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	FEVCPM035_E04_PDNR-F	AT5G51940	FEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
FEVCPM035_E04_PDNR-F[interact with..]	FEVCPS030_C09_PDNR-F FEVCPS016_F03_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FEVCPS030_C09_PDNR-F	421	ref	XP_002285872.1	PREDICTED: similar to PBC1 (20S proteasome beta subunit C1); peptidase isoform 2	Vitis vinifera	174	134 bits (337)	3e-30	63/71 (88%)	69/71 (97%)	+2
FEVCPS016_F03_PDNR-F	793	ref	NP_568589.1	UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase	Arabidopsis thaliana	187	288 bits (738)	3e-76	134/148 (90%)	142/148 (95%)	+1