Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEVCP	Contig0380	691

Contig Map:

(ProjectName=FEVCP SequenceName=Contig0380):
FEVCPS038_E02_PDNR-F:
FEVCPM001_A10_PDNRF:
FEVCPM036_H01_PDNR-F:

Sequences View:[Contig0380](Contig Seguence)

Sequences View:[Contig0380](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
sp	P27164.2	CALM3_PETHY RecName: Full=Calmodulin-related protein		184	294 bits (752)	6e-78	147/156 (94%)	150/156 (96%)	+2

KEGG Pathway	GO
Contig0380[2 Pathway]	Contig0380[12 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Environmental Information Processing	SignalTransduction	04070	Phosphatidylinositol signaling system	[PATH:ath04070]	Contig0380	AT3G43810	FEVCP
Organismal Systems	Environmental Adaptation	04626	Plant-pathogen interaction	[PATH:ath04626]	Contig0380	AT3G43810	FEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G43810	AT3G43810	calcium ion binding	GO:0005509	other binding
AT3G43810	AT3G43810	cellular_component	GO:0005575	unknown cellular components
AT3G43810	AT3G43810	calcium ion binding	GO:0005509	other binding
AT3G43810	AT3G43810	detection of calcium ion	GO:0005513	other biological processes
AT3G43810	AT3G43810	regulation of photomorphogenesis	GO:0010099	developmental processes
AT3G43810	AT3G43810	regulation of photomorphogenesis	GO:0010099	response to abiotic or biotic stimulus
AT3G43810	AT3G43810	calcium ion binding	GO:0005509	other binding
AT3G43810	AT3G43810	cellular_component	GO:0005575	unknown cellular components
AT3G43810	AT3G43810	calcium ion binding	GO:0005509	other binding
AT3G43810	AT3G43810	detection of calcium ion	GO:0005513	other biological processes
AT3G43810	AT3G43810	regulation of photomorphogenesis	GO:0010099	developmental processes
AT3G43810	AT3G43810	regulation of photomorphogenesis	GO:0010099	response to abiotic or biotic stimulus

Gene Network Informations
Gene Network	Interact with..
Contig0380[interact with..]	Contig0781 FEVCPM007_H06_PDNRF FEVCPM028_C02_PDNR-F FEVCPS006_B08_PDNRF Contig0380 FEVCPM003_F07_PDNRF Contig0423 Contig0834 FEVCPS028_B05_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0781	1003	ref	XP_002523728.1	superoxide dismutase [cu-zn], putative	Ricinus communis	213	292 bits (748)	3e-77	138/159 (86%)	151/159 (94%)	+2
FEVCPM007_H06_PDNRF	1005	gb	AAQ09007.1	superoxidase dismutase	Lycopersicon esculentum	217	291 bits (744)	9e-77	138/162 (85%)	149/162 (91%)	+1
FEVCPM028_C02_PDNR-F	845	gb	ACC93637.1	chloroplast Cu/Zn superoxide dismutase	Gossypium hirsutum	214	239 bits (610)	2e-61	116/161 (72%)	136/161 (84%), Gaps = 1/161 (0%)	+1
FEVCPS006_B08_PDNRF	894	ref	XP_002308841.1	predicted protein	Populus trichocarpa	297	282 bits (721)	4e-74	140/218 (64%)	162/218 (74%)	+1
Contig0380	691	sp	P27164.2	CALM3_PETHY RecName: Full=Calmodulin-related protein		184	294 bits (752)	6e-78	147/156 (94%)	150/156 (96%)	+2
FEVCPM003_F07_PDNRF	928	ref	NP_001147083.1	LOC100280692	Zea mays	485	307 bits (787)	2e-89	149/234 (63%)	182/234 (77%)	+2
Contig0423	1576	ref	XP_002329963.1	predicted protein	Populus trichocarpa	698	686 bits (1770)	0.0	356/439 (81%)	367/439 (83%), Gaps = 2/439 (0%)	+3
Contig0834	1608	ref	XP_002329963.1	predicted protein	Populus trichocarpa	698	547 bits (1410)	0.0	284/369 (76%)	297/369 (80%)	+3
FEVCPS028_B05_PDNR-F	842	ref	NP_001063503.1	Os09g0482400	Oryza sativa (japonica cultivar-group)	699	401 bits (1030)	e-110	203/210 (96%)	209/210 (99%)	+3