Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPM022_G11_pDNR-F	726

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPM022_G11_pDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_176291.1	FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding	Arabidopsis thaliana	148	142 bits (357)	4e-32	72/130 (55%)	86/130 (66%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Energy Metabolism	00195	Photosynthesis	[PATH:ath00195]	EICPM022_G11_pDNR-F	AT1G60950	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G60950	AT1G60950	chloroplast	GO:0009507	chloroplast
AT1G60950	AT1G60950	electron carrier activity	GO:0009055	other molecular functions
AT1G60950	AT1G60950	iron-sulfur cluster binding	GO:0051536	other binding
AT1G60950	AT1G60950	"2 iron, 2 sulfur cluster binding"	GO:0051537	other binding
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	plastid
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	chloroplast
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	other cytoplasmic components
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	other intracellular components
AT1G60950	AT1G60950	response to light stimulus	GO:0009416	response to abiotic or biotic stimulus
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other cellular processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other metabolic processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	electron transport or energy pathways
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other cellular processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other metabolic processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	electron transport or energy pathways

Gene Network Informations
Gene Network	Interact with..
EICPM022_G11_pDNR-F[interact with..]	Contig2820 Contig2990 EICPM032-C07_pDNR-R EICPS007_F02_pDNR-F EICPS052_C12_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig2820	727	ref	XP_002275771.1	PREDICTED: hypothetical protein isoform 2	Vitis vinifera	151	204 bits (520)	5e-51	104/152 (68%)	117/152 (76%), Gaps = 8/152 (5%)	+2
Contig2990	1127	gb	ABG33769.1	ferredoxin III	Musa acuminata	131	190 bits (483)	2e-46	86/105 (81%)	96/105 (91%)	+1
EICPM032-C07_pDNR-R	1029	gb	ABG33769.1	ferredoxin III	Musa acuminata	131	183 bits (465)	2e-44	83/105 (79%)	93/105 (88%)	+2
EICPS007_F02_pDNR-F	711	ref	XP_002311943.1	predicted protein	Populus trichocarpa	155	186 bits (472)	2e-45	92/122 (75%)	106/122 (86%)	+2
EICPS052_C12_pDNR-F	811	emb	CBI18580.1	unnamed protein product	Vitis vinifera	168	194 bits (493)	9e-48	104/155 (67%)	117/155 (75%), Gaps = 7/155 (4%)	+3