Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig3095	1011

Contig Map:

(ProjectName=FEICP SequenceName=Contig3095):
EICPM040_A11_pDNR-F:
EICPM040_A06_pDNR-F:

Sequences View:[Contig3095](Contig Seguence)

1011 bases 
CCGGCATTCATTGCGCGGGATTCGGCCATTACGGCCGGGATAGGGAGGGTGGTGTGCTTAAAAGAGCTGGCCACACAGAAGCCTCTGTTGATCTTGCTATACTGGCTGGATTATCACCAGCTGCTGTTTTGTGTGAAATTGTTGATGATGATGGTTCCATGGCACGCTTGCCAAAGCTTAGAGAATTTGCTGAAAGAGAAAGTATGAAAATCATCTCAATTGCGGACTTGATTAGGTATAGGAGGAAGAGAGATAAGCTGGTTGAGCGTGCTTCTGTTGCACGCTTACCTTTATCATGGGGTACATTCCAGGCCTATTGTTATAGGTCTTTGGTGGATGGGATAGAGCATATTGCCATGGTCAAAGGTGATATTGGTGATGGACATGGCATACTGGTGAGAGTGCATTCTGAATGCCTCACTGGCGACATATTTGGTTCGGCCAGATGTGATTGTGGTTCCCAGTTGGAAATGGCCATGAAGCACATTGAAAGAGCTGGCAGGGGTGTATTGGTTTACCTCCGTGGCCATGAGGGAAGGGGCATTGGCTTAGGTCATAAGCTTCGTGCTTATAACTTGCAGGACAACGGGCGTGATACTGTGGAAGCCAATGAGGAATTAGGTTTGCCTGTTGATTCAAGGGAATATGGCATCGGTGCACAGATATTGCAGGATCTCGGTGTCCGCACAATGAGGTTGATGACCAATAACCCTGCTAAGTACAGCGGCTTGAAAGGCTATGGGTTGAGCATCGTCGAGAAGGTTACCCTGCCAACCCTTATTACAAATGAGAACAAAAGGTACTTGGAGACTAAGCGGCTAAAGATGGGGCATGTCTATGGATCTGAATTCAATGGAAAGTTGCGTGAGTTGATCAAAGATGTGCATGAGCGAGCACTCAGCAGCATTCCTCATGATGCCATAGGTGGAAGCAATTTGTAATGAGTTATTTACCATTGCACTTTTTAATCTTGAATTCTGTGTGGAATTGACTCAAAAAAAAAAAAAAAAA

Sequences View:[Contig3095](Singleton Sequence)

Contig3095 1011  bases 
CCGGCATTCATTGCGCGGGATTCGGCCATTACGGCCGGGATAGGGAGGGTGGTGTGCTTAAAAGAGCTGGCCACACAGAAGCCTCTGTTGATCTTGCTATACTGGCTGGATTATCACCAGCTGCTGTTTTGTGTGAAATTGTTGATGATGATGGTTCCATGGCACGCTTGCCAAAGCTTAGAGAATTTGCTGAAAGAGAAAGTATGAAAATCATCTCAATTGCGGACTTGATTAGGTATAGGAGGAAGAGAGATAAGCTGGTTGAGCGTGCTTCTGTTGCACGCTTACCTTTATCATGGGGTACATTCCAGGCCTATTGTTATAGGTCTTTGGTGGATGGGATAGAGCATATTGCCATGGTCAAAGGTGATATTGGTGATGGACATGGCATACTGGTGAGAGTGCATTCTGAATGCCTCACTGGCGACATATTTGGTTCGGCCAGATGTGATTGTGGTTCCCAGTTGGAAATGGCCATGAAGCACATTGAAAGAGCTGGCAGGGGTGTATTGGTTTACCTCCGTGGCCATGAGGGAAGGGGCATTGGCTTAGGTCATAAGCTTCGTGCTTATAACTTGCAGGACAACGGGCGTGATACTGTGGAAGCCAATGAGGAATTAGGTTTGCCTGTTGATTCAAGGGAATATGGCATCGGTGCACAGATATTGCAGGATCTCGGTGTCCGCACAATGAGGTTGATGACCAATAACCCTGCTAAGTACAGCGGCTTGAAAGGCTATGGGTTGAGCATCGTCGAGAAGGTTACCCTGCCAACCCTTATTACAAATGAGAACAAAAGGTACTTGGAGACTAAGCGGCTAAAGATGGGGCATGTCTATGGATCTGAATTCAATGGAAAGTTGCGTGAGTTGATCAAAGATGTGCATGAGCGAGCACTCAGCAGCATTCCTCATGATGCCATAGGTGGAAGCAATTTGTAATGAGTTATTTACCATTGCACTTTTTAATCTTGAATTCTGTGTGGAATTGACTCAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002298707.1	predicted protein	Populus trichocarpa	552	471 bits (1211)	e-131	229/280 (81%)	253/280 (90%)	+3

KEGG Pathway	GO
Contig3095[1 Pathway]	Contig3095[26 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Metabo lism of Cofactors and Vitamins	00740	Riboflavin metabolism	[PATH:ath00740]	Contig3095	AT5G64300	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G64300	AT5G64300	chloroplast	GO:0009507	chloroplast
AT5G64300	AT5G64300	membrane	GO:0016020	other membranes
AT5G64300	AT5G64300	"3,4-dihydroxy-2-butanone-4-phosphate synthase activity"	GO:0008686	other enzyme activity
AT5G64300	AT5G64300	"3,4-dihydroxy-2-butanone-4-phosphate synthase activity"	GO:0008686	other enzyme activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	chloroplast	GO:0009507	chloroplast
AT5G64300	AT5G64300	membrane	GO:0016020	other membranes
AT5G64300	AT5G64300	"3,4-dihydroxy-2-butanone-4-phosphate synthase activity"	GO:0008686	other enzyme activity
AT5G64300	AT5G64300	"3,4-dihydroxy-2-butanone-4-phosphate synthase activity"	GO:0008686	other enzyme activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig3095[interact with..]	Contig3850 EICPS022_H03_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig3850	1442	ref	NP_001105909.1	12-oxo-phytodienoic acid reductase5	Zea mays	371	620 bits (1598)	e-175	296/360 (82%)	328/360 (91%)	+1
EICPS022_H03_pDNR-F	826	ref	XP_002327289.1	predicted protein	Populus trichocarpa	370	335 bits (860)	3e-90	161/200 (80%)	179/200 (89%), Gaps = 2/200 (1%)	+2