Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	FCTEVCPM135_H01_PDNR-F	971

Contig Map:

(ProjectName=FCTEVCP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FCTEVCPM135_H01_PDNR-F](Singleton Sequence)

FCTEVCPM135_H01_PDNR-F 971  bases 
GGGTGTGAGAGAAAGGTGCCCAGATGTCTATGGGAGAGGACGGAAGGAATGTCCTGGAGACGGGGAGAGCGGACCGCTCGGTGTGGCTAATGAAGTGCCCGACTCTGGTATCGAAGTCGTGGCAGTCCACTGCTGCGCTGTCGTCGTCGGATTCCGGCATTCCTAACCCTATCGTCGCCAAGGTCGTGCTCTCCCTCGACCCCGTCCACAACGATGAGCCCAACGCGCTCCAGTTCAAGATGGAGTTGGCTCAGAAAGATGGTGTCAATACACCCAAGAGCTATTCCTTAAACATGTTCAAAGATTTTGTTCCCATGTGTGTTTTCTCAGAATCAAGTCAAGGAAAATGTGCATTGGAAGGGAAGGTTGAGCATAAATTTGACATGGAACCTCATAGTGAAAACTTTGGGGAATATGGCAAACTTTGCCGTGAAAGGACAAGCAAAGCTATGATAAAAACCAGACAAATTCAGATAATTGACAAGGATCATGGTGTTCTTATGAGGCCCATGCCTGGTATGGTTGGCTTGGTTCCATCTGGTTCAAAGGATAAGAAGAAGGTTGCACCAGTGAAGGGATCTGATGTTAAACGAACGAGAAGGGACCGTAGAGAACTTGAAAATATCATCTTTAAGCTTTTTGAAAGGCAGCCAAACTGGGCGTTGAAGCAACTGGTTCTGGAAACAGACCAACCCGAGCAATTCCTCAAAGAAATACTAAATGATCTCTGCGTATACAACAAACGCGGACCGAACCAAGGAACCCATGAGCTCAAGCCGGAATACAAGAAATCAGCCGAGGATGAAATGCAACAGAACTGAGCACAATACCATGGTTGTTGATTTCAGTAGCTGTGATCTGTAGTTAAAAATCCTTTTAGAGTGTGTTAGTTAATGCTGAGAAGCGATAGCTTGGAAAAAATTTATCAATACTTCTTCAACCAAAGGATTGGCGGAAAATTCTATATTGGA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
dbj	BAD82068.1	putative transcription initiation factor IIF beta subunit	Oryza sativa Japonica Group	277	374 bits (960)	e-102	189/273 (69%)	220/273 (80%), Gaps = 15/273 (5%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[19 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03022	Basal transcription factors	[PATH:ath03022]	FCTEVCPM135_H01_PDNR-F	AT1G75510	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G75510	AT1G75510	mitochondrion	GO:0005739	mitochondria
AT1G75510	AT1G75510	transcription factor TFIIF complex	GO:0005674	nucleus
AT1G75510	AT1G75510	transcription factor TFIIF complex	GO:0005674	other intracellular components
AT1G75510	AT1G75510	RNA polymerase II transcription factor activity	GO:0003702	other molecular functions
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	transcription
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	other cellular processes
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	other metabolic processes
AT1G75510	AT1G75510	ATP binding	GO:0005524	nucleotide binding
AT1G75510	AT1G75510	ATP-dependent helicase activity	GO:0008026	hydrolase activity
AT1G75510	AT1G75510	ATP-dependent helicase activity	GO:0008026	other enzyme activity
AT1G75510	AT1G75510	RNA polymerase II transcription factor activity	GO:0003702	other molecular functions
AT1G75510	AT1G75510	catalytic activity	GO:0003824	other enzyme activity
AT1G75510	AT1G75510	general RNA polymerase II transcription factor activity	GO:0016251	other molecular functions
AT1G75510	AT1G75510	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT1G75510	AT1G75510	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT1G75510	AT1G75510	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	transcription
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	other cellular processes
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
FCTEVCPM135_H01_PDNR-F[interact with..]	FCTEVCPM135_H01_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FCTEVCPM135_H01_PDNR-F	971	dbj	BAD82068.1	putative transcription initiation factor IIF beta subunit	Oryza sativa Japonica Group	277	374 bits (960)	e-102	189/273 (69%)	220/273 (80%), Gaps = 15/273 (5%)	+3