Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	FCTEVCPM099_E11_PDNR-F	1132

Contig Map:

(ProjectName=FCTEVCP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FCTEVCPM099_E11_PDNR-F](Singleton Sequence)

FCTEVCPM099_E11_PDNR-F 1132  bases 
TGAGACGCGCGGATCGTTAATTCCTTCCTATCCCCGGATTTTTATTAAACCCGGGATTCAAGGCAGCTGCAGTTGATGGCTCGGGTTTTTAACATATCTATAAATCCTTCTCGTCTTTCCATTGATCACCGTGCCTTGAAAATCCCTCAATCGTTCTTCAAGAAATTTCCAGAAAGTTTCTTCAGACTCTCTTTTGGAGCAAGAAGATCTTACATACCTCTCACAATAATGGCAACCTCACTACAATCTAAGTTCTCCAAGTCTGCAAACTACATCCCTGACACTCAACCTGCTAAAGAGGTGCTAGAGATCTGGCGCAGTGCTGATGCAGTTTGCTTTGATGTTGATAGTACTGTCTGCTTGCATGAGGGAATCGATGAACTTGCTGATTTTTGTGGTGCTGGGAAAGCTGTTTCTGAGTGGACTACCAAGGCAATGAGTGGGTCTGTTCCATTTGAGGAGGCCCTTGCAGCCAGACTATCTTTATTCAGCCCTTCTCTTTCACAACTCCAGTGTTTTCTCGATGAGAGGCCTCCACGGTTATCGCCCGGCATTGCAGAATTGATCAACAAGCTGAAAACTTCTAATATTGATGTTTATTTGATATCTGGAGGATTTCGTCAAATGATCAAACCTGTTGCGGTGCAGCTTGAAATTCCACTAGAAAACATCTTTGCCAATCAGTTACTTTTTGGGAGTTCCGGCGAGTTCCTTGGTTTTGACCCAACCGAGTTTACGTCTAGGAGTGGTGGAAAGGCTGTTGCTGTGCAGCATATAAGAAAGGTCCATGGATACAAGTCTCTAATAATGATTGGTGATGGAGCAACTGATCTTGAGGCTCGAATGCCCGGCGGTGCTGATTTGTTTATCTGTTATGGAGGGTCCTGCTTCGAGAAGCTGTTGCAGCTAAAGCTGATTGGGTGGTCCTTAGTTTTGAGACCTTTTGACTGCATTGAATAGATTTGCATCACTCGCACTGCTGTGCTGTTCTATTGCTATGCTTTCTCATCTTGTCATATTTCCTTTTTATGGACATAAATCGTGTATGAATAAATATTTGCCTTCTGTTTTTGGGCTATTCGAAACAAATAAAAATACGTTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_001068315.1	Os11g0629500	Oryza sativa (japonica cultivar-group)	296	304 bits (778)	7e-84	154/222 (69%)	178/222 (80%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[10 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Amino Acid Metabolism	00260	Glycine, serine and threonine metabolism	[PATH:ath00260]	FCTEVCPM099_E11_PDNR-F	AT1G18640	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G18640	AT1G18640	chloroplast	GO:0009507	chloroplast
AT1G18640	AT1G18640	phosphoserine phosphatase activity	GO:0004647	hydrolase activity
AT1G18640	AT1G18640	L-serine biosynthetic process	GO:0006564	other cellular processes
AT1G18640	AT1G18640	L-serine biosynthetic process	GO:0006564	other metabolic processes
AT1G18640	AT1G18640	chloroplast	GO:0009507	chloroplast
AT1G18640	AT1G18640	chloroplast	GO:0009507	chloroplast
AT1G18640	AT1G18640	phosphoserine phosphatase activity	GO:0004647	hydrolase activity
AT1G18640	AT1G18640	L-serine biosynthetic process	GO:0006564	other cellular processes
AT1G18640	AT1G18640	L-serine biosynthetic process	GO:0006564	other metabolic processes
AT1G18640	AT1G18640	chloroplast	GO:0009507	chloroplast

Gene Network Informations
Gene Network	Interact with..
FCTEVCPM099_E11_PDNR-F[interact with..]	Contig0873 FCTEVCPM029_G02_PDNR-F FCTEVCPM099_E11_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0873	855	ref	XP_002320312.1	predicted protein	Populus trichocarpa	129	115 bits (289)	4e-24	57/68 (83%)	63/68 (92%), Gaps = 1/68 (1%)	+3
FCTEVCPM029_G02_PDNR-F	962	ref	XP_002520726.1	potassium channel regulatory factor, putative	Ricinus communis	417	285 bits (730)	4e-75	159/265 (60%)	186/265 (70%), Gaps = 9/265 (3%)	+2
FCTEVCPM099_E11_PDNR-F	1132	ref	NP_001068315.1	Os11g0629500	Oryza sativa (japonica cultivar-group)	296	304 bits (778)	7e-84	154/222 (69%)	178/222 (80%)	+1