Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	FCTEVCPM036_E01_PDNR-F	910

Contig Map:

(ProjectName=FCTEVCP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FCTEVCPM036_E01_PDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_001149721.1	transcription initiation factor IIB	Zea mays	312	314 bits (805)	7e-84	160/179 (89%)	165/179 (92%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[19 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03022	Basal transcription factors	[PATH:ath03022]	FCTEVCPM036_E01_PDNR-F	AT3G10330	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G10330	AT3G10330	translation initiation factor activity	GO:0003743	nucleic acid binding
AT3G10330	AT3G10330	zinc ion binding	GO:0008270	other binding
AT3G10330	AT3G10330	translational initiation	GO:0006413	protein metabolism
AT3G10330	AT3G10330	translational initiation	GO:0006413	other cellular processes
AT3G10330	AT3G10330	translational initiation	GO:0006413	other metabolic processes
AT3G10330	AT3G10330	translational initiation	GO:0006413	cell organization and biogenesis
AT3G10330	AT3G10330	"transcription initiation, DNA-dependent"	GO:0006352	transcription
AT3G10330	AT3G10330	"transcription initiation, DNA-dependent"	GO:0006352	other cellular processes
AT3G10330	AT3G10330	"transcription initiation, DNA-dependent"	GO:0006352	other metabolic processes
AT3G10330	AT3G10330	"regulation of transcription, DNA-dependent"	GO:0006355	transcription
AT3G10330	AT3G10330	"regulation of transcription, DNA-dependent"	GO:0006355	other cellular processes
AT3G10330	AT3G10330	"regulation of transcription, DNA-dependent"	GO:0006355	other metabolic processes
AT3G10330	AT3G10330	transcription regulator activity	GO:0030528	other molecular functions
AT3G10330	AT3G10330	regulation of transcription	GO:0045449	transcription
AT3G10330	AT3G10330	regulation of transcription	GO:0045449	other cellular processes
AT3G10330	AT3G10330	regulation of transcription	GO:0045449	other metabolic processes
AT3G10330	AT3G10330	cytoplasm	GO:0005737	other cytoplasmic components
AT3G10330	AT3G10330	nucleus	GO:0005634	nucleus
AT3G10330	AT3G10330	RNA polymerase II transcription factor activity	GO:0003702	other molecular functions

Gene Network Informations
Gene Network	Interact with..
FCTEVCPM036_E01_PDNR-F[interact with..]	FCTEVCPM135_H01_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FCTEVCPM135_H01_PDNR-F	971	dbj	BAD82068.1	putative transcription initiation factor IIF beta subunit	Oryza sativa Japonica Group	277	374 bits (960)	e-102	189/273 (69%)	220/273 (80%), Gaps = 15/273 (5%)	+3