Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	FCTEVCPM019_E02_PDNR-F	997

Contig Map:

(ProjectName=FCTEVCP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FCTEVCPM019_E02_PDNR-F](Singleton Sequence)

FCTEVCPM019_E02_PDNR-F 997  bases 
TGATTCCTCAAGCACTACAACTGAATTTGTCATCTCACCAAATGGGCGGTTCAAGAAAAAAAATTAGATCTTGGATGCGCGGCCATCTTCTGGGTAGTGGTTCTTTTGGAACCGTGTATGAAGGGATCAGCGATGATGGTACATTTATTGCTGTTAAAGAGGTGTCTTTGCTGGATAAAGGAAGCAATGCTCAACAATGCATTCTTCAGCTCGAACAAGAAATTGCACTTTTGAGCCAGTTTGAGCATGAAAACATTGTCCAGTATTATGGAACTGATAAGGAAGAATCAAAGCTTTACATCTTCCTTGAGCTTGTAACACAAGGTTCAATAGCATCTCTTTATCAAAAGTATCATTTGCGCGATACCCAAGTCTCATCGTATACAAGACAAATTCTCAATGGCTTGAATTATCTTCATGAACGTGATGTGGTGCACAGAGATATCAAATGTGCCAATATATTGGTTCATGCAAATGGTTCTATCAAACTTGCAGATTTTGGATTAGCGAAGGAGATTTCGAAATTCAATGATCTGAAATCTTGCAAAGGAAGTGTGTACTGGATGGCCCCAGAGGTTGTCCATCCAAGGAAGACATATGGGCGCGCAGCTGATATATGGAGCCTGGGCTGCACAGTTCTTGAGATGCTGACTCGTCAGATTCCTTATCCGAATGTCGAGTGGCAACATGCGTTCTACAGAATTGGGCGTGGCGATCAACCCCCAATACCCAATCACCTATCAAGCGATGCGCAGGATTTTATCAGGAAGTGCGTGCAGGTGGATCCAAATGCAAGACCCACTGCTGCTCAGCTGTTAGAGCACCCCTTTATCACCAGGAGGCCACTTGAAACCTATTAATTATTAGCTCCTTGGTATGAGCGGATTTATTGATTCGGGGAGAGGACCGTATCTCACCCCAGTAGACACGTGGGAACGTTTACCTTTGGGGAGCATTTCATACGTGGTGGCCCTGATTTAGCCAGTAGTCGATCAAG

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_001051017.1	Os03g0703400	Oryza sativa (japonica cultivar-group)	654	444 bits (1142)	e-126	213/265 (80%)	241/265 (90%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[20 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Organismal Systems	Environmental Adaptation	04626	Plant-pathogen interaction	[PATH:ath04626]	FCTEVCPM019_E02_PDNR-F	AT4G08500	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G08500	AT4G08500	nucleus	GO:0005634	nucleus
AT4G08500	AT4G08500	DNA binding	GO:0003677	DNA or RNA binding
AT4G08500	AT4G08500	MAP kinase kinase kinase activity	GO:0004709	kinase activity
AT4G08500	AT4G08500	MAP kinase kinase kinase activity	GO:0004709	transferase activity
AT4G08500	AT4G08500	MAP kinase kinase kinase activity	GO:0004709	kinase activity
AT4G08500	AT4G08500	MAP kinase kinase kinase activity	GO:0004709	transferase activity
AT4G08500	AT4G08500	kinase activity	GO:0016301	kinase activity
AT4G08500	AT4G08500	protein binding	GO:0005515	protein binding
AT4G08500	AT4G08500	protein binding	GO:0005515	protein binding
AT4G08500	AT4G08500	response to cold	GO:0009409	response to stress
AT4G08500	AT4G08500	response to cold	GO:0009409	response to abiotic or biotic stimulus
AT4G08500	AT4G08500	response to osmotic stress	GO:0006970	response to stress
AT4G08500	AT4G08500	response to osmotic stress	GO:0006970	response to stress
AT4G08500	AT4G08500	response to osmotic stress	GO:0006970	response to abiotic or biotic stimulus
AT4G08500	AT4G08500	response to osmotic stress	GO:0006970	response to abiotic or biotic stimulus
AT4G08500	AT4G08500	response to wounding	GO:0009611	response to stress
AT4G08500	AT4G08500	response to salt stress	GO:0009651	response to stress
AT4G08500	AT4G08500	response to salt stress	GO:0009651	response to abiotic or biotic stimulus
AT4G08500	AT4G08500	kinase binding	GO:0019900	protein binding
AT4G08500	AT4G08500	response to cadmium ion	GO:0046686	other biological processes

Gene Network Informations
Gene Network	Interact with..
FCTEVCPM019_E02_PDNR-F[interact with..]	Contig0888 FCTEVCPM019_E02_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0888	870	gb	AAF73016.1	AF262934_1 ubiquitin conjugating protein	Avicennia marina	152	319 bits (817)	3e-85	150/152 (98%)	152/152 (100%)	+1
FCTEVCPM019_E02_PDNR-F	997	ref	NP_001051017.1	Os03g0703400	Oryza sativa (japonica cultivar-group)	654	444 bits (1142)	e-126	213/265 (80%)	241/265 (90%)	+3