Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	Contig1444	958

Contig Map:

(ProjectName=FCTEVCP SequenceName=Contig1444):
FCTEVCPM030_F02_PDNR-F:
FCTEVCPM098_B08_PDNR-F:

Sequences View:[Contig1444](Contig Seguence)

Sequences View:[Contig1444](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACF06509.1	RNA polymerase II 15.9 kDa subunit	Elaeis guineensis	138	245 bits (625)	5e-63	124/138 (89%)	132/138 (95%)	+1

KEGG Pathway	GO
Contig1444[3 Pathway]	Contig1444[32 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	Contig1444	AT5G09920	FCTEVCP
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	Contig1444	AT5G09920	FCTEVCP
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	Contig1444	AT5G09920	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig1444[interact with..]	FCTEVCPM135_H01_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FCTEVCPM135_H01_PDNR-F	971	dbj	BAD82068.1	putative transcription initiation factor IIF beta subunit	Oryza sativa Japonica Group	277	374 bits (960)	e-102	189/273 (69%)	220/273 (80%), Gaps = 15/273 (5%)	+3