Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	Contig1100	327

Contig Map:

(ProjectName=FCTEVCP SequenceName=Contig1100):
FCTEVCPM082_B08_PDNR-F:
FCTEVCPM082_B07_PDNR-F:
FCTEVCPM143_F05_pDNR-F:
FCTEVCPM141_A06_pDNR-F:
FCTEVCPM141_D11_pDNR-F:
FCTEVCPM142_E06_pDNR-F:

Sequences View:[Contig1100](Contig Seguence)

Sequences View:[Contig1100](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	AAR02191.1	phytochrome A	Cyrtosia septentrionalis	1118	129 bits (325)	8e-29	66/84 (78%)	75/84 (89%)	+1

KEGG Pathway	GO
Contig1100[1 Pathway]	Contig1100[24 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Organismal Systems	Environmental Adaptation	04712	Circadian rhythm - plant	[PATH:ath04712]	Contig1100	AT1G09570	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G09570	AT1G09570	cytoplasm	GO:0005737	other cytoplasmic components
AT1G09570	AT1G09570	cytoplasm	GO:0005737	other cytoplasmic components
AT1G09570	AT1G09570	nuclear body	GO:0016604	nucleus
AT1G09570	AT1G09570	nuclear body	GO:0016604	other intracellular components
AT1G09570	AT1G09570	nucleus	GO:0005634	nucleus
AT1G09570	AT1G09570	nucleus	GO:0005634	nucleus
AT1G09570	AT1G09570	G-protein coupled photoreceptor activity	GO:0008020	receptor binding or activity
AT1G09570	AT1G09570	protein histidine kinase activity	GO:0004673	kinase activity
AT1G09570	AT1G09570	protein histidine kinase activity	GO:0004673	kinase activity
AT1G09570	AT1G09570	protein histidine kinase activity	GO:0004673	transferase activity
AT1G09570	AT1G09570	protein histidine kinase activity	GO:0004673	transferase activity
AT1G09570	AT1G09570	signal transducer activity	GO:0004871	other molecular functions
AT1G09570	AT1G09570	gravitropism	GO:0009630	response to abiotic or biotic stimulus
AT1G09570	AT1G09570	phototropism	GO:0009638	response to abiotic or biotic stimulus
AT1G09570	AT1G09570	"regulation of transcription, DNA-dependent"	GO:0006355	transcription
AT1G09570	AT1G09570	"regulation of transcription, DNA-dependent"	GO:0006355	other cellular processes
AT1G09570	AT1G09570	"regulation of transcription, DNA-dependent"	GO:0006355	other metabolic processes
AT1G09570	AT1G09570	red or far-red light photoreceptor activity	GO:0009883	receptor binding or activity
AT1G09570	AT1G09570	red or far-red light photoreceptor activity	GO:0009883	receptor binding or activity
AT1G09570	AT1G09570	response to arsenic	GO:0046685	other biological processes
AT1G09570	AT1G09570	red light signaling pathway	GO:0010161	response to abiotic or biotic stimulus
AT1G09570	AT1G09570	response to very low fluence red light stimulus	GO:0010203	response to abiotic or biotic stimulus
AT1G09570	AT1G09570	response to continuous far red light stimulus by the high-irradiance response system	GO:0010201	response to abiotic or biotic stimulus
AT1G09570	AT1G09570	response to far red light	GO:0010218	response to abiotic or biotic stimulus

Gene Network Informations
Gene Network	Interact with..
Contig1100[interact with..]	Contig1100

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig1100	327	gb	AAR02191.1	phytochrome A	Cyrtosia septentrionalis	1118	129 bits (325)	8e-29	66/84 (78%)	75/84 (89%)	+1