Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	Contig0606	1046

Contig Map:

(ProjectName=FCTEVCP SequenceName=Contig0606):
FCTEVCPM067_B10_PDNR-F:
FCTEVCPM121_C07_PDNR-F:

Sequences View:[Contig0606](Contig Seguence)

1046 bases 
GAGCGAATGGCGGCATCAGACTCAGAGATAAGGGCGGCGGAGGAGGAGCTCCGGCGAGGATTCCAGACGCTGGAGGTTGTACAGAAGGAGCCGACGATTCCAGTCTACCACACCTATCTCAACCGTGCTCCCCAAAGGAACGCCCTCACAGTATCCTTCTTCTCCGAACTCCCCCAAGCCCTCTCTCTCCTCGCCATCCTCCCCTCCGCTCGCGTTGTCGTTCTCGCTGCCCGTGGATCCCATTTCTGCTCCGGAATCGATCTCGAATCACTCCGATCTTTGTCTTCCTCCACCTCAGCCGATCCCGCCACCGCCGCCGATGTGCTCCGCCGCCGTATCCTTTCTCTCCAAGCAGCTATCTCTGCCATCGAGCGCTTCCGCAGGCCCGTCGTAGCTGCCATCCAAGGAGCTTGCATCGGAGGCGGCGTAGATCTCGCTGCCGCCTGCGACATACGATGCTGTTCTGACGACGCTTTTTTTATTGTCAAGGAGGTCGACCTCGCCCTTGCAGCTGATCTGGGGTCTCTGCAGCGCCTGCCGCACATAGTTGGTTATGGCAACGCCGTTGACCTTGCGCTCACCTGCCGGAGGGTTTCAGCTTCGGAGGCCAAGGCGATGGGCCTCGTCACTAGGGTTTTTCCCTCCATATCGGCGCTTGATCAGGGTGTCGACCAGCTTGCCGAAGGACTGGCGGCGAAGTCGGCGGTGGCAGTGATGGGGACGAAGGCGGTGCTTCTGAAGAGCCGAGATCAAAAGGTGGAGGAGGGACTCGAGTACATCGCAACCTGAAACTCAGCCATGCTCATGTCTCCTGACCTGGAGGAGGCTGTTGCCGCTCAGCTACAGAAGCGCAAGCCTAACTTCTCCAAACTGTGATTTTTAGTCTTCTTTCATTTGTAATTTGGAAGATTTGCATGCACACCACACAATCCTTATGTATTTACATATGTAGCACCTCAACTTTCATATGTAATCATACCACCATGGTATTAAAACAAACTTTAGACAAATATAAAAGTGTTATGAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig0606](Singleton Sequence)

Contig0606 1046  bases 
GAGCGAATGGCGGCATCAGACTCAGAGATAAGGGCGGCGGAGGAGGAGCTCCGGCGAGGATTCCAGACGCTGGAGGTTGTACAGAAGGAGCCGACGATTCCAGTCTACCACACCTATCTCAACCGTGCTCCCCAAAGGAACGCCCTCACAGTATCCTTCTTCTCCGAACTCCCCCAAGCCCTCTCTCTCCTCGCCATCCTCCCCTCCGCTCGCGTTGTCGTTCTCGCTGCCCGTGGATCCCATTTCTGCTCCGGAATCGATCTCGAATCACTCCGATCTTTGTCTTCCTCCACCTCAGCCGATCCCGCCACCGCCGCCGATGTGCTCCGCCGCCGTATCCTTTCTCTCCAAGCAGCTATCTCTGCCATCGAGCGCTTCCGCAGGCCCGTCGTAGCTGCCATCCAAGGAGCTTGCATCGGAGGCGGCGTAGATCTCGCTGCCGCCTGCGACATACGATGCTGTTCTGACGACGCTTTTTTTATTGTCAAGGAGGTCGACCTCGCCCTTGCAGCTGATCTGGGGTCTCTGCAGCGCCTGCCGCACATAGTTGGTTATGGCAACGCCGTTGACCTTGCGCTCACCTGCCGGAGGGTTTCAGCTTCGGAGGCCAAGGCGATGGGCCTCGTCACTAGGGTTTTTCCCTCCATATCGGCGCTTGATCAGGGTGTCGACCAGCTTGCCGAAGGACTGGCGGCGAAGTCGGCGGTGGCAGTGATGGGGACGAAGGCGGTGCTTCTGAAGAGCCGAGATCAAAAGGTGGAGGAGGGACTCGAGTACATCGCAACCTGAAACTCAGCCATGCTCATGTCTCCTGACCTGGAGGAGGCTGTTGCCGCTCAGCTACAGAAGCGCAAGCCTAACTTCTCCAAACTGTGATTTTTAGTCTTCTTTCATTTGTAATTTGGAAGATTTGCATGCACACCACACAATCCTTATGTATTTACATATGTAGCACCTCAACTTTCATATGTAATCATACCACCATGGTATTAAAACAAACTTTAGACAAATATAAAAGTGTTATGAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_001045254.1	Os01g0925200	Oryza sativa (japonica cultivar-group)	291	300 bits (768)	2e-79	163/286 (56%)	208/286 (72%), Gaps = 2/286 (0%)	+1

KEGG Pathway	GO
Contig0606[1 Pathway]	Contig0606[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Cellular Processes	Transport and Catabolism	04146	Peroxisome	[PATH:ath04146]	Contig0606	AT5G43280	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G43280	AT5G43280	peroxisome	GO:0005777	other cytoplasmic components
AT5G43280	AT5G43280	peroxisome	GO:0005777	other intracellular components
AT5G43280	AT5G43280	peroxisome	GO:0005777	other cytoplasmic components
AT5G43280	AT5G43280	peroxisome	GO:0005777	other intracellular components
AT5G43280	AT5G43280	peroxisome	GO:0005777	other cytoplasmic components
AT5G43280	AT5G43280	peroxisome	GO:0005777	other intracellular components
AT5G43280	AT5G43280	enoyl-CoA hydratase activity	GO:0004300	other enzyme activity
AT5G43280	AT5G43280	fatty acid catabolic process	GO:0009062	other cellular processes
AT5G43280	AT5G43280	fatty acid catabolic process	GO:0009062	other metabolic processes
AT5G43280	AT5G43280	metabolic process	GO:0008152	other metabolic processes
AT5G43280	AT5G43280	seed germination	GO:0009845	developmental processes
AT5G43280	AT5G43280	"delta3,5-delta2,4-dienoyl-CoA isomerase activity"	GO:0051750	other enzyme activity
AT5G43280	AT5G43280	"delta3,5-delta2,4-dienoyl-CoA isomerase activity"	GO:0051750	other enzyme activity
AT5G43280	AT5G43280	peroxisome	GO:0005777	other cytoplasmic components
AT5G43280	AT5G43280	peroxisome	GO:0005777	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig0606[interact with..]	Contig0606

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0606	1046	ref	NP_001045254.1	Os01g0925200	Oryza sativa (japonica cultivar-group)	291	300 bits (768)	2e-79	163/286 (56%)	208/286 (72%), Gaps = 2/286 (0%)	+1