Back [Phalaenopsis Transcriptome]
Contig Information:
| Project Name | Query Name | Length of query |
|---|
| FAECPM | FAECPM008_H04_PDNRF | 274 |
Contig Map:
(ProjectName=FAECPM
SequenceName=NoContigFind): |  |
Sequences View:[NoContigFind](Contig Seguence)
Sequences View:[FAECPM008_H04_PDNRF](Singleton Sequence)
Contig Annotation:
| GenBank | Accession number
(Best hits in the GenBank) | Annotation | Species | Length of homologous protein(Amino Acid) | Score | Expect value | Identities | similarity | Frame |
|---|
| ref | XP_002277029.1 | PREDICTED: similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding | Vitis vinifera | 890 | 63.9 bits (154) | 5e-09 | 26/33 (78%) | 33/33 (100%) | +1 |
Pathway Informations
| First-level terms | Second-level terms | KEGG pathway Num | KEGG pathway Name | KEGG pathway Description | contig Name | locusName | project Name |
| Genetic Information Processing | Folding, Sorting and Degradation | 03050 | Proteasome | [PATH:ath03050] | FAECPM008_H04_PDNRF | AT4G28470 | FAECPM |
GO Informations
| Locus Name | Go Name | Go Class Descriptions | GO id | Anotations01 |
| AT4G28470 | AT4G28470 | binding | GO:0005488 | other binding |
| AT4G28470 | AT4G28470 | enzyme regulator activity | GO:0030234 | other molecular functions |
| AT4G28470 | AT4G28470 | "proteasome regulatory particle, base subcomplex" | GO:0008540 | other intracellular components |
| AT4G28470 | AT4G28470 | protein catabolic process | GO:0030163 | protein metabolism |
| AT4G28470 | AT4G28470 | proteasome complex | GO:0000502 | other intracellular components |
| Query Name | Length of query | GenBank | Accession number(Best hits in the GenBank) | Annotation | Species | Length of homologous protein(Amino Acid) | Score | Expect value | Identities | similarity | Frame |
|---|
| Contig0657 | 1024 | emb | CAC09486.2 | H0811E11.2 | Oryza sativa (indica cultivar-group) | 389 | 519 bits (1336) | e-145 | 259/302 (85%) | 282/302 (93%) | +3 |