Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
454	contig04396	258

Contig Map:

(ProjectName=454
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[contig04396](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002532501.1	116 kD U5 small nuclear ribonucleoprotein component, putative	Ricinus communis	992	171 bits (433)	2e-41	82/86 (95%)	86/86 (100%)	-1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03040	Spliceosome	[PATH:ath03040]	contig04396	AT1G06220	454

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G06220	AT1G06220	cell wall	GO:0005618	cell wall
AT1G06220	AT1G06220	plasma membrane	GO:0005886	plasma membrane
AT1G06220	AT1G06220	GTP binding	GO:0005525	nucleotide binding
AT1G06220	AT1G06220	GTPase activity	GO:0003924	hydrolase activity
AT1G06220	AT1G06220	nuclear speck	GO:0016607	nucleus
AT1G06220	AT1G06220	nuclear speck	GO:0016607	other intracellular components
AT1G06220	AT1G06220	translation elongation factor activity	GO:0003746	nucleic acid binding
AT1G06220	AT1G06220	"translation factor activity, nucleic acid binding"	GO:0008135	nucleic acid binding
AT1G06220	AT1G06220	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT1G06220	AT1G06220	regulation of embryo sac egg cell differentiation	GO:0045694	developmental processes
AT1G06220	AT1G06220	regulation of embryo sac egg cell differentiation	GO:0045694	other cellular processes
AT1G06220	AT1G06220	cell wall	GO:0005618	cell wall
AT1G06220	AT1G06220	plasma membrane	GO:0005886	plasma membrane
AT1G06220	AT1G06220	GTP binding	GO:0005525	nucleotide binding
AT1G06220	AT1G06220	GTPase activity	GO:0003924	hydrolase activity

Gene Network Informations
Gene Network	Interact with..
contig04396[interact with..]	FXQQ4OB01BTT6J FXQQ4OB01CWUQL FXQQ4OB01DR0ZF FXQQ4OB02FXWA7 FXQQ4OB02H7XYV FXQQ4OB02HMBSP FXQQ4OB02JK8VA

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FXQQ4OB01BTT6J	244	ref	XP_002518663.1	U520, putative	Ricinus communis	1809	119 bits (299)	8e-26	53/80 (66%)	69/80 (86%)	+2
FXQQ4OB01CWUQL	238	ref	XP_002518663.1	U520, putative	Ricinus communis	1809	154 bits (389)	3e-36	69/74 (93%)	73/74 (98%)	-3
FXQQ4OB01DR0ZF	235	ref	XP_002518663.1	U520, putative	Ricinus communis	1809	146 bits (369)	6e-34	71/78 (91%)	76/78 (97%)	-1
FXQQ4OB02FXWA7	246	emb	CAO64800.1	unnamed protein product	Vitis vinifera	2072	138 bits (348)	2e-31	69/81 (85%)	74/81 (91%)	+3
FXQQ4OB02H7XYV	237	ref	XP_002518663.1	U520, putative	Ricinus communis	1809	146 bits (369)	6e-34	71/78 (91%)	76/78 (97%)	-3
FXQQ4OB02HMBSP	174	gb	EEE56150.1	hypothetical protein OsJ_05035	Oryza sativa Japonica Group	2238	118 bits (296)	2e-25	54/57 (94%)	56/57 (98%)	+1
FXQQ4OB02JK8VA	244	gb	EEE56150.1	hypothetical protein OsJ_05035	Oryza sativa Japonica Group	2238	119 bits (298)	1e-25	60/80 (75%)	63/80 (78%)	-3