Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
454	contig00067	673

Contig Map:

(ProjectName=454
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[contig00067](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_176291.1	FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding	Arabidopsis thaliana	148	101 bits (251)	7e-27	48/82 (58%)	57/82 (69%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Energy Metabolism	00195	Photosynthesis	[PATH:ath00195]	contig00067	AT1G60950	454

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G60950	AT1G60950	chloroplast	GO:0009507	chloroplast
AT1G60950	AT1G60950	electron carrier activity	GO:0009055	other molecular functions
AT1G60950	AT1G60950	iron-sulfur cluster binding	GO:0051536	other binding
AT1G60950	AT1G60950	"2 iron, 2 sulfur cluster binding"	GO:0051537	other binding
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	plastid
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	chloroplast
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	other cytoplasmic components
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	other intracellular components
AT1G60950	AT1G60950	response to light stimulus	GO:0009416	response to abiotic or biotic stimulus
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other cellular processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other metabolic processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	electron transport or energy pathways
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other cellular processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other metabolic processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	electron transport or energy pathways

Gene Network Informations
Gene Network	Interact with..
contig00067[interact with..]	contig03579 contig05775 FXQQ4OB02F6OPZ

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
contig03579	649	gb	ABG33769.1	ferredoxin III	Musa acuminata	131	166 bits (421)	1e-39	74/89 (83%)	83/89 (93%)	-3
contig05775	629	ref	XP_002311943.1	predicted protein	Populus trichocarpa	155	179 bits (455)	1e-43	88/112 (78%)	100/112 (89%)	+2
FXQQ4OB02F6OPZ	253	ref	XP_002517134.1	Ferredoxin-1, putative	Ricinus communis	146	61.6 bits (148)	3e-08	29/33 (87%)	30/33 (90%)	+2