Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
454	contig05775	629

Contig Map:

(ProjectName=454
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[contig05775](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002311943.1	predicted protein	Populus trichocarpa	155	179 bits (455)	1e-43	88/112 (78%)	100/112 (89%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[7 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Energy Metabolism	00195	Photosynthesis	[PATH:ath00195]	contig05775	AT2G27510	454

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G27510	AT2G27510	chloroplast	GO:0009507	chloroplast
AT2G27510	AT2G27510	electron carrier activity	GO:0009055	other molecular functions
AT2G27510	AT2G27510	iron-sulfur cluster binding	GO:0051536	other binding
AT2G27510	AT2G27510	"2 iron, 2 sulfur cluster binding"	GO:0051537	other binding
AT2G27510	AT2G27510	electron transport chain	GO:0022900	other metabolic processes
AT2G27510	AT2G27510	electron transport chain	GO:0022900	electron transport or energy pathways
AT2G27510	AT2G27510	electron carrier activity	GO:0009055	other molecular functions

Gene Network Informations
Gene Network	Interact with..
contig05775[interact with..]	FXQQ4OB02F6OPZ

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FXQQ4OB02F6OPZ	253	ref	XP_002517134.1	Ferredoxin-1, putative	Ricinus communis	146	61.6 bits (148)	3e-08	29/33 (87%)	30/33 (90%)	+2