Home   [Orchid Unigene Database]
Library Name:       Contig Lists:  
Contig Information:
Library NameQuery NameLength of query
OrchidUnigenecontig05933254





Sequences View:[contig05933](Singleton Sequence)


Contig Annotation:
GenBankAccession number
(Best hits in the GenBank)
AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
refXP_002313865.1 predicted protein Populus trichocarpa346124 bits (311)3e-2762/67 (92%)65/67 (97%) +1


KEGG PathwayGO
NoContigFind[3 Pathway]NoContigFind[76 GoTerm]

Pathway Informations
First-level termsSecond-level termsKEGG pathway NumKEGG pathway NameKEGG pathway Description contig NamelocusNameproject Name
Genetic Information ProcessingTranscription03020RNA polymerase[PATH:ath03020]contig05933AT2G15430OrchidUnigene
MetabolismNucleotide Metabolism00230Purine metabolism[PATH:ath00230]contig05933AT2G15430OrchidUnigene
MetabolismNucleotide Metabolism00240Pyrimidine metabolism[PATH:ath00240]contig05933AT2G15430OrchidUnigene

GO Informations
Locus NameGo NameGo Class DescriptionsGO idAnotations01
AT2G15430AT2G15430DNA bindingGO:0003677DNA or RNA binding
AT2G15430AT2G15430DNA-directed RNA polymerase activityGO:0003899transferase activity
AT2G15430AT2G15430transcriptionGO:0006350transcription
AT2G15430AT2G15430protein dimerization activityGO:0046983protein binding
AT2G15430AT2G15430"DNA-directed RNA polymerase II, core complex"GO:0005665nucleus
AT2G15430AT2G15430"DNA-directed RNA polymerase II, core complex"GO:0005665other intracellular components
AT2G15430AT2G15430cytoplasmGO:0005737other cytoplasmic components
AT2G15430AT2G15430cytoplasmGO:0005737other cytoplasmic components
AT2G15430AT2G15430nucleolusGO:0005730nucleus
AT2G15430AT2G15430nucleolusGO:0005730nucleus
AT2G15430AT2G15430nucleolusGO:0005730other intracellular components
AT2G15430AT2G15430nucleolusGO:0005730other intracellular components
AT2G15430AT2G15430nucleusGO:0005634nucleus
AT2G15430AT2G15430nucleusGO:0005634nucleus
AT2G15430AT2G15430DNA bindingGO:0003677DNA or RNA binding
AT2G15430AT2G15430DNA-directed RNA polymerase activityGO:0003899transferase activity
AT2G15430AT2G15430transcriptionGO:0006350transcription
AT2G15430AT2G15430DNA-directed RNA polymerase IV complexGO:0000418nucleus
AT2G15430AT2G15430DNA-directed RNA polymerase IV complexGO:0000418other intracellular components
AT2G15430AT2G15430DNA bindingGO:0003677DNA or RNA binding
AT2G15430AT2G15430DNA-directed RNA polymerase activityGO:0003899transferase activity
AT2G15430AT2G15430transcriptionGO:0006350transcription
AT2G15430AT2G15430protein dimerization activityGO:0046983protein binding
AT2G15430AT2G15430"DNA-directed RNA polymerase II, core complex"GO:0005665nucleus
AT2G15430AT2G15430"DNA-directed RNA polymerase II, core complex"GO:0005665other intracellular components
AT2G15430AT2G15430cytoplasmGO:0005737other cytoplasmic components
AT2G15430AT2G15430cytoplasmGO:0005737other cytoplasmic components
AT2G15430AT2G15430nucleolusGO:0005730nucleus
AT2G15430AT2G15430nucleolusGO:0005730nucleus
AT2G15430AT2G15430nucleolusGO:0005730other intracellular components
AT2G15430AT2G15430nucleolusGO:0005730other intracellular components
AT2G15430AT2G15430nucleusGO:0005634nucleus
AT2G15430AT2G15430nucleusGO:0005634nucleus
AT2G15430AT2G15430DNA bindingGO:0003677DNA or RNA binding
AT2G15430AT2G15430DNA-directed RNA polymerase activityGO:0003899transferase activity
AT2G15430AT2G15430transcriptionGO:0006350transcription
AT2G15430AT2G15430DNA-directed RNA polymerase IV complexGO:0000418nucleus
AT2G15430AT2G15430DNA-directed RNA polymerase IV complexGO:0000418other intracellular components
AT2G15430AT2G15430DNA bindingGO:0003677DNA or RNA binding
AT2G15430AT2G15430DNA-directed RNA polymerase activityGO:0003899transferase activity
AT2G15430AT2G15430transcriptionGO:0006350transcription
AT2G15430AT2G15430protein dimerization activityGO:0046983protein binding
AT2G15430AT2G15430"DNA-directed RNA polymerase II, core complex"GO:0005665nucleus
AT2G15430AT2G15430"DNA-directed RNA polymerase II, core complex"GO:0005665other intracellular components
AT2G15430AT2G15430cytoplasmGO:0005737other cytoplasmic components
AT2G15430AT2G15430cytoplasmGO:0005737other cytoplasmic components
AT2G15430AT2G15430nucleolusGO:0005730nucleus
AT2G15430AT2G15430nucleolusGO:0005730nucleus
AT2G15430AT2G15430nucleolusGO:0005730other intracellular components
AT2G15430AT2G15430nucleolusGO:0005730other intracellular components
AT2G15430AT2G15430nucleusGO:0005634nucleus
AT2G15430AT2G15430nucleusGO:0005634nucleus
AT2G15430AT2G15430DNA bindingGO:0003677DNA or RNA binding
AT2G15430AT2G15430DNA-directed RNA polymerase activityGO:0003899transferase activity
AT2G15430AT2G15430transcriptionGO:0006350transcription
AT2G15430AT2G15430DNA-directed RNA polymerase IV complexGO:0000418nucleus
AT2G15430AT2G15430DNA-directed RNA polymerase IV complexGO:0000418other intracellular components
AT2G15430AT2G15430DNA bindingGO:0003677DNA or RNA binding
AT2G15430AT2G15430DNA-directed RNA polymerase activityGO:0003899transferase activity
AT2G15430AT2G15430transcriptionGO:0006350transcription
AT2G15430AT2G15430protein dimerization activityGO:0046983protein binding
AT2G15430AT2G15430"DNA-directed RNA polymerase II, core complex"GO:0005665nucleus
AT2G15430AT2G15430"DNA-directed RNA polymerase II, core complex"GO:0005665other intracellular components
AT2G15430AT2G15430cytoplasmGO:0005737other cytoplasmic components
AT2G15430AT2G15430cytoplasmGO:0005737other cytoplasmic components
AT2G15430AT2G15430nucleolusGO:0005730nucleus
AT2G15430AT2G15430nucleolusGO:0005730nucleus
AT2G15430AT2G15430nucleolusGO:0005730other intracellular components
AT2G15430AT2G15430nucleolusGO:0005730other intracellular components
AT2G15430AT2G15430nucleusGO:0005634nucleus
AT2G15430AT2G15430nucleusGO:0005634nucleus
AT2G15430AT2G15430DNA bindingGO:0003677DNA or RNA binding
AT2G15430AT2G15430DNA-directed RNA polymerase activityGO:0003899transferase activity
AT2G15430AT2G15430transcriptionGO:0006350transcription
AT2G15430AT2G15430DNA-directed RNA polymerase IV complexGO:0000418nucleus
AT2G15430AT2G15430DNA-directed RNA polymerase IV complexGO:0000418other intracellular components

Gene Network Informations
Gene NetworkInteract with..
contig05933[interact with..]ConsensusfromContig4750
ConsensusfromContig7352
ConsensusfromContig2619
Singletons7204
ConsensusfromContig5912
FXQQ4OB02H5VML
Singletons15607
FXQQ4OB02JMSZK
contig01883
Singletons20850
ConsensusfromContig2580
contig05933
EICPM004-A9_pDNR-R
Singletons10197
Singletons9342
ConsensusfromContig233
FPEAECP014_F12_PDNR-F
Singletons49155
ConsensusfromContig6594
Singletons10273

Query NameLength of queryGenBankAccession number(Best hits in the GenBank)AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
ConsensusfromContig4750_Average_coverage__3.58809gbACU14035.1 unknown Glycine max212279 bits (713)3e-73147/188 (78%)151/188 (80%) -2
ConsensusfromContig7352_Average_coverage__8.50915gbACU24120.1 unknown Glycine max212271 bits (692)9e-71137/159 (86%)141/159 (88%) +3
ConsensusfromContig2619_Average_coverage__1.62437embCBI17757.1 unnamed protein product Vitis vinifera475257 bits (657)3e-67122/145 (84%)137/145 (94%) +2
Singletons72042276embCBI17757.1 unnamed protein product Vitis vinifera475597 bits (1539)e-168310/468 (66%)361/468 (77%), Gaps = 5/468 (1%) -3
ConsensusfromContig5912_Average_coverage__2.00224refXP_002315071.1 predicted protein Populus trichocarpa42294.4 bits (233)4e-1843/49 (87%)46/49 (93%) -3
FXQQ4OB02H5VMLrefXP_002513328.1 glyceraldehyde 3-phosphate dehydrogenase, putative Ricinus communis426154 bits (390)2e-3675/80 (93%)79/80 (98%) +3
Singletons156071576refXP_002312235.1 predicted protein Populus trichocarpa422498 bits (1283)e-159264/375 (70%)294/375 (78%), Gaps = 4/375 (1%) +1
FXQQ4OB02JMSZKrefNP_001049265.1 Os03g0196600 Oryza sativa (japonica cultivar-group)525128 bits (321)2e-2858/75 (77%)65/75 (86%) -1
contig01883426[No hits found]
Singletons20850553refNP_001067421.1 Os11g0194800 Oryza sativa (japonica cultivar-group)74142 bits (357)2e-3266/72 (91%)68/72 (94%) -3
ConsensusfromContig2580_Average_coverage__6.801208refXP_002441353.1 hypothetical protein SORBIDRAFT_09g025080 Sorghum bicolor267396 bits (1018)e-108197/265 (74%)221/265 (83%), Gaps = 7/265 (2%) +2
contig05933254refXP_002313865.1 predicted protein Populus trichocarpa346124 bits (311)3e-2762/67 (92%)65/67 (97%) +1
EICPM004-A9_pDNR-R968refXP_002518700.1 DNA-directed RNA polymerase II subunit, putative Ricinus communis318225 bits (573)5e-59119/172 (69%)135/172 (78%) +1
Singletons101971256refXP_002518700.1 DNA-directed RNA polymerase II subunit, putative Ricinus communis318503 bits (1295)e-140256/325 (78%)288/325 (88%), Gaps = 3/325 (0%) +3
Singletons9342665refXP_002281364.1 PREDICTED: hypothetical protein isoform 2 Vitis vinifera105153 bits (386)2e-3571/91 (78%)80/91 (87%) +3
ConsensusfromContig233_Average_coverage__3.01987spQ42877.1RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit B2; Short=RNA polymerase II subunit1191627 bits (1617)e-178303/321 (94%)317/321 (98%) -2
ConsensusfromContig2330_Average_coverage__2.52477embCBI17325.1 unnamed protein product Vitis vinifera38061.2 bits (147)4e-0838/109 (34%)59/109 (54%), Gaps = 1/109 (0%) -1
ConsensusfromContig2331_Average_coverage__2.86476refXP_002510764.1 organic anion transporter, putative Ricinus communis343145 bits (365)2e-3371/107 (66%)86/107 (80%), Gaps = 2/107 (1%) -2
ConsensusfromContig2332_Average_coverage__4.61260[No hits found]
ConsensusfromContig2333_Average_coverage__1.74579embCBI28435.1 unnamed protein product Vitis vinifera362347 bits (891)3e-94162/190 (85%)178/190 (93%) +2
ConsensusfromContig2334_Average_coverage__2.97942refXP_002325862.1 predicted protein Populus trichocarpa353478 bits (1230)e-133229/282 (81%)264/282 (93%) -1
ConsensusfromContig2335_Average_coverage__1.33475refNP_001105847.1 LOC732748 precursor Zea mays303190 bits (483)2e-4992/140 (65%)113/140 (80%) +3
ConsensusfromContig2336_Average_coverage__1.50475refXP_002311572.1 predicted protein Populus trichocarpa359214 bits (546)2e-54104/135 (77%)120/135 (88%), Gaps = 2/135 (1%) +1
ConsensusfromContig2337_Average_coverage__1.87475gbAAB36543.1 DnaJ-like protein Phaseolus vulgaris161103 bits (256)8e-2152/85 (61%)60/85 (70%), Gaps = 4/85 (4%) -3
ConsensusfromContig2338_Average_coverage__3.471685gbACC66148.3 cell division cycle protein Dimocarpus longan8051008 bits (2606)0.0514/561 (91%)525/561 (93%) +1
ConsensusfromContig2339_Average_coverage__2.69475[No hits found]
FPEAECP014_F12_PDNR-F1033refXP_002519060.1 DNA-directed RNA polymerase II subunit, putative Ricinus communis1194377 bits (969)e-115184/196 (93%)192/196 (97%) +2
Singletons491553077gbAAZ08457.1 RNA polymerase II second largest subunit Rhododendron macrophyllum11911929 bits (4997)0.0949/1026 (92%)989/1026 (96%), Gaps = 1/1026 (0%) +1
ConsensusfromContig6594_Average_coverage__4.46601refXP_002267800.1 PREDICTED: hypothetical protein Vitis vinifera51108 bits (270)3e-2249/51 (96%)49/51 (96%) -2
Singletons10273328refXP_001784402.1 predicted protein Physcomitrella patens subsp. patens5671.2 bits (173)3e-1132/33 (96%)33/33 (100%) +2