Home   [Orchid Unigene Database]
Library Name:       Contig Lists:  
Contig Information:
Library NameQuery NameLength of query
OrchidUnigeneSingletons488041179





Sequences View:[Singletons48804](Singleton Sequence)


Contig Annotation:
GenBankAccession number
(Best hits in the GenBank)
AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
refXP_002509739.1 replication factor C / DNA polymerase III gamma-tau subunit, putative Ricinus communis333560 bits (1442)e-157277/320 (86%)300/320 (93%) -2


KEGG PathwayGO
NoContigFind[3 Pathway]NoContigFind[30 GoTerm]

Pathway Informations
First-level termsSecond-level termsKEGG pathway NumKEGG pathway NameKEGG pathway Description contig NamelocusNameproject Name
Genetic Information ProcessingReplication and Repair03030DNA replication[PATH:ath03030]Singletons48804AT1G63160OrchidUnigene
Genetic Information ProcessingReplication and Repair03430Mismatch repair[PATH:ath03430]Singletons48804AT1G63160OrchidUnigene
Genetic Information ProcessingReplication and Repair03420Nucleotide excision repair[PATH:ath03420]Singletons48804AT1G63160OrchidUnigene

GO Informations
Locus NameGo NameGo Class DescriptionsGO idAnotations01
AT1G63160AT1G63160DNA replication factor C complexGO:0005663other intracellular components
AT1G63160AT1G63160ATP bindingGO:0005524nucleotide binding
AT1G63160AT1G63160DNA bindingGO:0003677DNA or RNA binding
AT1G63160AT1G63160DNA clamp loader activityGO:0003689DNA or RNA binding
AT1G63160AT1G63160DNA clamp loader activityGO:0003689hydrolase activity
AT1G63160AT1G63160nucleotide bindingGO:0000166nucleotide binding
AT1G63160AT1G63160DNA replicationGO:0006260DNA or RNA metabolism
AT1G63160AT1G63160nucleoside-triphosphatase activityGO:0017111hydrolase activity
AT1G63160AT1G63160DNA replication factor C complexGO:0005663other intracellular components
AT1G63160AT1G63160ATPase activityGO:0016887hydrolase activity
AT1G63160AT1G63160DNA replication factor C complexGO:0005663other intracellular components
AT1G63160AT1G63160ATP bindingGO:0005524nucleotide binding
AT1G63160AT1G63160DNA bindingGO:0003677DNA or RNA binding
AT1G63160AT1G63160DNA clamp loader activityGO:0003689DNA or RNA binding
AT1G63160AT1G63160DNA clamp loader activityGO:0003689hydrolase activity
AT1G63160AT1G63160nucleotide bindingGO:0000166nucleotide binding
AT1G63160AT1G63160DNA replicationGO:0006260DNA or RNA metabolism
AT1G63160AT1G63160nucleoside-triphosphatase activityGO:0017111hydrolase activity
AT1G63160AT1G63160DNA replication factor C complexGO:0005663other intracellular components
AT1G63160AT1G63160ATPase activityGO:0016887hydrolase activity
AT1G63160AT1G63160DNA replication factor C complexGO:0005663other intracellular components
AT1G63160AT1G63160ATP bindingGO:0005524nucleotide binding
AT1G63160AT1G63160DNA bindingGO:0003677DNA or RNA binding
AT1G63160AT1G63160DNA clamp loader activityGO:0003689DNA or RNA binding
AT1G63160AT1G63160DNA clamp loader activityGO:0003689hydrolase activity
AT1G63160AT1G63160nucleotide bindingGO:0000166nucleotide binding
AT1G63160AT1G63160DNA replicationGO:0006260DNA or RNA metabolism
AT1G63160AT1G63160nucleoside-triphosphatase activityGO:0017111hydrolase activity
AT1G63160AT1G63160DNA replication factor C complexGO:0005663other intracellular components
AT1G63160AT1G63160ATPase activityGO:0016887hydrolase activity

Gene Network Informations
Gene NetworkInteract with..
Singletons48804[interact with..]contig02208
Singletons19474
ConsensusfromContig5492
FXQQ4OB02IF8XD
Singletons10648
Singletons48491
VFCP_24F10
FXQQ4OB02JFEES
Singletons36879
Singletons46212
FPTEVCPM038_C03_PDNR-F
Singletons13194
ConsensusfromContig3482
ConsensusfromContig3527
FXQQ4OB01BJCQL
ConsensusfromContig2334
Singletons18324

Query NameLength of queryGenBankAccession number(Best hits in the GenBank)AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
contig02208refNP_001064917.1 Os10g0489200 Oryza sativa (japonica cultivar-group)828205 bits (521)2e-5198/121 (80%)110/121 (90%) +1
Singletons194742408gbAAL31067.1AC090120_13 putative DNA ligase Oryza sativa Japonica Group8101021 bits (2641)0.0511/664 (76%)576/664 (86%) +2
ConsensusfromContig5492_Average_coverage__3.00235refXP_002328784.1 predicted protein Populus trichocarpa528146 bits (369)6e-3469/78 (88%)76/78 (97%) +2
FXQQ4OB02IF8XDrefNP_001066357.1 Os12g0197100 Oryza sativa (japonica cultivar-group)518139 bits (349)1e-3162/82 (75%)75/82 (91%) +3
Singletons10648603refNP_001066357.1 Os12g0197100 Oryza sativa (japonica cultivar-group)518228 bits (582)2e-58108/136 (79%)124/136 (91%) +2
Singletons48491926refNP_001066357.1 Os12g0197100 Oryza sativa (japonica cultivar-group)518308 bits (788)7e-82149/181 (82%)166/181 (91%) +2
VFCP_24F10649refNP_001061170.1 Os08g0191200 Oryza sativa (japonica cultivar-group)527246 bits (627)2e-63118/143 (82%)131/143 (91%) +3
FXQQ4OB02JFEESrefXP_001772028.1 predicted protein Physcomitrella patens subsp. patens63594.7 bits (234)3e-1845/63 (71%)55/63 (87%) -2
Singletons36879191refXP_001772028.1 predicted protein Physcomitrella patens subsp. patens63585.5 bits (210)2e-1541/63 (65%)52/63 (82%) +3
Singletons46212459refXP_002514998.1 alpha DNA polymerase, putative Ricinus communis621218 bits (554)2e-55104/155 (67%)129/155 (83%), Gaps = 3/155 (1%) +2
FPTEVCPM038_C03_PDNR-F1050gbACG35868.1 replication factor C subunit 3 Zea mays362509 bits (1312)e-142259/321 (80%)285/321 (88%), Gaps = 4/321 (1%) +1
Singletons131941196dbjBAB16439.1 replication factor C 36kDa subunit Oryza sativa Japonica Group367454 bits (1169)e-126249/368 (67%)277/368 (75%), Gaps = 13/368 (3%) +2
ConsensusfromContig3482_Average_coverage__1.97833gbADA70357.1 proliferation cell nuclear antigen Persea americana290484 bits (1245)e-135241/263 (91%)257/263 (97%) -2
ConsensusfromContig3527_Average_coverage__3.721039gbADA70357.1 proliferation cell nuclear antigen Persea americana290457 bits (1175)e-126229/264 (86%)244/264 (92%) +2
FXQQ4OB01BJCQLgbAAG24908.1AF305075_1 proliferating cell nuclear antigen Nicotiana benthamiana26473.2 bits (178)9e-1234/40 (85%)38/40 (95%) +1
ConsensusfromContig2334_Average_coverage__2.97942refXP_002325862.1 predicted protein Populus trichocarpa353478 bits (1230)e-133229/282 (81%)264/282 (93%) -1
Singletons18324673refXP_002325862.1 predicted protein Populus trichocarpa353244 bits (622)7e-63122/158 (77%)133/158 (84%) +3