Home   [Orchid Unigene Database]
Library Name:       Contig Lists:  
Contig Information:
Library NameQuery NameLength of query
OrchidUnigeneFXQQ4OB01A1TB0





Sequences View:[FXQQ4OB01A1TB0](Singleton Sequence)


Contig Annotation:
GenBankAccession number
(Best hits in the GenBank)
AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
refXP_002520757.1 DNA repair helicase rad3/xp-d, putative Ricinus communis758123 bits (309)6e-2759/62 (95%)60/62 (96%) -1


KEGG PathwayGO
NoContigFind[1 Pathway]NoContigFind[24 GoTerm]

Pathway Informations
First-level termsSecond-level termsKEGG pathway NumKEGG pathway NameKEGG pathway Description contig NamelocusNameproject Name
Genetic Information ProcessingReplication and Repair03420Nucleotide excision repair[PATH:ath03420]FXQQ4OB01A1TB0AT1G03190OrchidUnigene

GO Informations
Locus NameGo NameGo Class DescriptionsGO idAnotations01
AT1G03190AT1G03190nucleusGO:0005634nucleus
AT1G03190AT1G03190ATP bindingGO:0005524nucleotide binding
AT1G03190AT1G03190ATP-dependent DNA helicase activityGO:0004003hydrolase activity
AT1G03190AT1G03190ATP-dependent DNA helicase activityGO:0004003other enzyme activity
AT1G03190AT1G03190ATP-dependent helicase activityGO:0008026hydrolase activity
AT1G03190AT1G03190ATP-dependent helicase activityGO:0008026other enzyme activity
AT1G03190AT1G03190DNA bindingGO:0003677DNA or RNA binding
AT1G03190AT1G03190"hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"GO:0016818hydrolase activity
AT1G03190AT1G03190nucleic acid bindingGO:0003676nucleic acid binding
AT1G03190AT1G03190DNA repairGO:0006281DNA or RNA metabolism
AT1G03190AT1G03190response to UVGO:0009411response to abiotic or biotic stimulus
AT1G03190AT1G03190response to heatGO:0009408response to stress
AT1G03190AT1G03190response to heatGO:0009408response to stress
AT1G03190AT1G03190response to heatGO:0009408response to abiotic or biotic stimulus
AT1G03190AT1G03190response to heatGO:0009408response to abiotic or biotic stimulus
AT1G03190AT1G03190nucleusGO:0005634nucleus
AT1G03190AT1G03190ATP bindingGO:0005524nucleotide binding
AT1G03190AT1G03190ATP-dependent DNA helicase activityGO:0004003hydrolase activity
AT1G03190AT1G03190ATP-dependent DNA helicase activityGO:0004003other enzyme activity
AT1G03190AT1G03190ATP-dependent helicase activityGO:0008026hydrolase activity
AT1G03190AT1G03190ATP-dependent helicase activityGO:0008026other enzyme activity
AT1G03190AT1G03190DNA bindingGO:0003677DNA or RNA binding
AT1G03190AT1G03190"hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"GO:0016818hydrolase activity
AT1G03190AT1G03190nucleic acid bindingGO:0003676nucleic acid binding

Gene Network Informations
Gene NetworkInteract with..
FXQQ4OB01A1TB0[interact with..]FXQQ4OB01A1TB0
Singletons14444
Singletons14636
EFC_013_E03
FXQQ4OB01EVJLE
FXQQ4OB02F0450
FXQQ4OB02JONZ6
Singletons12504
Singletons17766
ConsensusfromContig5541
EICPM020_C07_pDNR-F
FXQQ4OB02GB2DJ
Singletons1219
Singletons3372

Query NameLength of queryGenBankAccession number(Best hits in the GenBank)AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
FXQQ4OB01A1TB0refXP_002520757.1 DNA repair helicase rad3/xp-d, putative Ricinus communis758123 bits (309)6e-2759/62 (95%)60/62 (96%) -1
Singletons144441760refXP_002520757.1 DNA repair helicase rad3/xp-d, putative Ricinus communis7581044 bits (2700)0.0507/571 (88%)548/571 (95%) -1
Singletons14636542refXP_002520757.1 DNA repair helicase rad3/xp-d, putative Ricinus communis758174 bits (440)5e-5092/156 (58%)111/156 (71%), Gaps = 4/156 (2%) -1
EFC_013_E03refXP_002522807.1 DNA repair protein RAD50, putative Ricinus communis1256275 bits (704)9e-73135/139 (97%)138/139 (99%) +3
FXQQ4OB01EVJLErefXP_002522807.1 DNA repair protein RAD50, putative Ricinus communis125685.5 bits (210)3e-2437/44 (84%)42/44 (95%) -1
FXQQ4OB02F0450[No hits found]
FXQQ4OB02JONZ6gbABV90886.1 DNA repair protein Rad50 Triticum turgidum131667.0 bits (162)6e-1037/80 (46%)47/80 (58%) +2
Singletons125043350refXP_002300148.1 predicted protein Populus trichocarpa13161025 bits (2650)0.0534/842 (63%)641/842 (76%), Gaps = 2/842 (0%) +2
Singletons17766739refXP_002522807.1 DNA repair protein RAD50, putative Ricinus communis1256393 bits (1009)e-107192/205 (93%)201/205 (98%) -3
ConsensusfromContig5541_Average_coverage__2.63234refXP_002511977.1 DNA mismatch repair protein MSH2, putative Ricinus communis936146 bits (369)6e-3470/77 (90%)76/77 (98%) -3
EICPM020_C07_pDNR-F1110refXP_002317931.1 predicted protein Populus trichocarpa944366 bits (939)e-104200/323 (61%)229/323 (70%), Gaps = 2/323 (0%) +2
FXQQ4OB02GB2DJembCBI15412.1 unnamed protein product Vitis vinifera945119 bits (297)1e-2559/79 (74%)64/79 (81%) +1
Singletons1219723embCBI15412.1 unnamed protein product Vitis vinifera945125 bits (315)1e-6959/71 (83%)65/71 (91%) +2
Singletons12190275[No hits found]
Singletons12191350[No hits found]
Singletons12192259[No hits found]
Singletons12193533[No hits found]
Singletons12195272[No hits found]
Singletons12196373[No hits found]
Singletons12197258gbABB80657.1 reverse transcriptase Musa acuminata AAA Group7560.1 bits (144)8e-0831/48 (64%)35/48 (72%), Gaps = 1/48 (2%) +1
Singletons12198356gbABG22442.1 oxidoreductase, short chain dehydrogenase/reductase family protein, expressed Oryza sativa (japonica cultivar-group)207152 bits (384)1e-3572/114 (63%)92/114 (80%) +1
Singletons12199265[No hits found]
Singletons33721928refXP_002511977.1 DNA mismatch repair protein MSH2, putative Ricinus communis936835 bits (2158)0.0425/628 (67%)495/628 (78%), Gaps = 4/628 (0%) -3
Singletons33720154refXP_002441236.1 hypothetical protein SORBIDRAFT_09g022880 Sorghum bicolor80765.1 bits (157)2e-0928/38 (73%)31/38 (81%) -1
Singletons33722154[No hits found]
Singletons33723154[No hits found]
Singletons33725154[No hits found]
Singletons33726154refNP_001046840.1 Os02g0474700 Oryza sativa (japonica cultivar-group)67599.8 bits (247)9e-2046/51 (90%)49/51 (96%) -2
Singletons33728154[No hits found]
Singletons33729154dbjBAF25507.2 Os09g0503400 Oryza sativa Japonica Group109569.3 bits (168)1e-1036/51 (70%)37/51 (72%) -1