Home   [Orchid Unigene Database]
Library Name:       Contig Lists:  
Contig Information:
Library NameQuery NameLength of query
OrchidUnigeneConsensusfromContig5442_Average_coverage__2.00237


ConsensusfromContig5442_Average_coverage__[Green Color:forward,Red Color:Reverse]
LN:237CTCGCCTACCCAAATGAAGCCATTGCATCCAAGTATCAAATCGACACCATATTGTTCGAGATCATGGAAATGCTGCTTGCGGCGTTTCACTAAATATGCCGGAACTCTAAGCAGTTGACCCCTTTCAAGCTTTCCGTACTTCTGACTTCTTGCCTGCAAATGCAAGCTTCCATCATGCTGGAAACCACGTACTTCGGCACAAACGACATCATTCTCCTCAAAGATGCTGCGCATGTT
FXQQ4OB01ENRTRCTCGCCTCCCAAATGAAGCCATTGCATCCAAGTATCAAATCGACACCATATTGTTCGAGATCATGGAAATGCTGCTTGCGGCGTTTCACTAAATATGCCGGAACTCTAAGCAGTTGACCCCTTTCAAGCTTTCCGTACTTCTGACTTCTTGCCTGCAAATGCAAGCTTCCATCATGCTGGAAACCACGTACTTCGGCACAAACGACATCATTCTCCTCAAAGATGCTGCGACAATGTT
FXQQ4OB02F3BNMCTCGCCTACCCAAATGAAGCCATTGCATCCAAGTATCAAATCGACACCATATTGTTCGAGATCATGGAAATGCTGCTTGCGGCGTTTCACTAAATATGCCGGAACTCTAAGCAGTTGACCCCTTTCAAGCTTTCCGTACTTCTGACTTCTTGCCTGCAAATGCAAGCTTCCATCATGCTGGAAACCACGTACTTCGGCACAAACGACATCATTCTCCTCAAAGATGCTGCGCATGTT

Sequences View:[ConsensusfromContig5442_Average_coverage__](Contig Seguence)

Sequences View:[ConsensusfromContig5442_Average_coverage__](Singleton Sequence)


Contig Annotation:
GenBankAccession number
(Best hits in the GenBank)
AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
embCBI32318.1 unnamed protein product Vitis vinifera320149 bits (377)8e-3569/79 (87%)74/79 (93%) -1


KEGG PathwayGO
ConsensusfromContig5442_Average_coverage__[1 Pathway]ConsensusfromContig5442_Average_coverage__[2 GoTerm]

Pathway Informations
First-level termsSecond-level termsKEGG pathway NumKEGG pathway NameKEGG pathway Description contig NamelocusNameproject Name
Genetic Information ProcessingFolding, Sorting and Degradation03018RNA degradation[PATH:ath03018]ConsensusfromContig5442AT1G03360OrchidUnigene

GO Informations
Locus NameGo NameGo Class DescriptionsGO idAnotations01
AT1G03360AT1G03360mitochondrionGO:0005739mitochondria
AT1G03360AT1G03360exonuclease activityGO:0004527hydrolase activity

Gene Network Informations
Gene NetworkInteract with..
ConsensusfromContig5442[interact with..]contig06389
Singletons18785
Singletons18843
Singletons47549
ConsensusfromContig1543
ConsensusfromContig2601
contig04547
FXQQ4OB01C3330
FXQQ4OB01DKNSA
FXQQ4OB02I1AFQ
Singletons14386
ConsensusfromContig1432
ConsensusfromContig235
EFC_015_A06
ConsensusfromContig2198

Query NameLength of queryGenBankAccession number(Best hits in the GenBank)AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
contig06389242refNP_001066571.1 Os12g0279000 Oryza sativa (japonica cultivar-group)776126 bits (316)9e-2864/80 (80%)73/80 (91%) -2
Singletons187851383refXP_002527838.1 helicase, putative Ricinus communis991639 bits (1648)0.0321/385 (83%)337/385 (87%) -1
Singletons188431140refNP_001066571.1 Os12g0279000 Oryza sativa (japonica cultivar-group)776182 bits (461)e-12192/156 (58%)119/156 (76%) -2
Singletons47549628refNP_001066571.1 Os12g0279000 Oryza sativa (japonica cultivar-group)776282 bits (721)2e-74141/169 (83%)157/169 (92%) +3
ConsensusfromContig1543_Average_coverage__3.441088refXP_002322717.1 predicted protein Populus trichocarpa439387 bits (994)e-105201/301 (66%)239/301 (79%), Gaps = 24/301 (7%) +3
ConsensusfromContig2601_Average_coverage__1.72304refNP_001045055.1 Os01g0891400 Oryza sativa (japonica cultivar-group)239114 bits (285)4e-2451/74 (68%)64/74 (86%) -1
contig04547258gbACG32102.1 exosome complex exonuclease RRP42 Zea mays28770.1 bits (170)6e-1334/42 (80%)38/42 (90%) +3
FXQQ4OB01C3330refXP_002321194.1 predicted protein Populus trichocarpa28793.6 bits (231)6e-1850/69 (72%)55/69 (79%), Gaps = 1/69 (1%) -1
FXQQ4OB01DKNSAgbACG37636.1 exosome complex exonuclease RRP42 Zea mays287134 bits (338)2e-3063/75 (84%)71/75 (94%) +3
FXQQ4OB02I1AFQrefXP_002321194.1 predicted protein Populus trichocarpa287110 bits (276)4e-2353/65 (81%)57/65 (87%) -3
Singletons143861073gbACG32102.1 exosome complex exonuclease RRP42 Zea mays287438 bits (1126)e-121223/277 (80%)248/277 (89%), Gaps = 1/277 (0%) -1
ConsensusfromContig1432_Average_coverage__3.35941embCBI20856.1 unnamed protein product Vitis vinifera243339 bits (870)2e-91169/243 (69%)199/243 (81%) -1
ConsensusfromContig235_Average_coverage__3.11984gbACG32946.1 exosome complex exonuclease RRP41 Zea mays242404 bits (1038)e-111202/240 (84%)222/240 (92%), Gaps = 1/240 (0%) -3
ConsensusfromContig2350_Average_coverage__2.81891dbjBAB55003.1 nitrite reductase Prunus persica532501 bits (1290)e-140236/296 (79%)267/296 (90%) -2
ConsensusfromContig2351_Average_coverage__2.52473refNP_001062767.1 Os09g0281300 Oryza sativa (japonica cultivar-group)190242 bits (618)9e-63115/157 (73%)133/157 (84%) -3
ConsensusfromContig2352_Average_coverage__2.00473dbjBAD17454.1 glycerophosphoryl diester phosphodiesterase 2 precursor-like protein Oryza sativa Japonica Group13698.2 bits (243)3e-1945/90 (50%)60/90 (66%) -3
ConsensusfromContig2353_Average_coverage__5.601538refNP_001049595.1 Os03g0255500 Oryza sativa (japonica cultivar-group)663697 bits (1800)0.0330/386 (85%)352/386 (91%) +1
ConsensusfromContig2354_Average_coverage__1.92612gbABU45516.1 calcium-dependent protein kinase 1 Phalaenopsis amabilis593405 bits (1042)e-111203/203 (100%)203/203 (100%) -2
ConsensusfromContig2355_Average_coverage__2.50589gbEAY90022.1 hypothetical protein OsI_11592 Oryza sativa Indica Group227105 bits (262)3e-2153/105 (50%)70/105 (66%) -1
ConsensusfromContig2356_Average_coverage__1.45564refXP_002326917.1 predicted protein Populus trichocarpa391187 bits (475)5e-4699/186 (53%)136/186 (73%), Gaps = 2/186 (1%) +3
ConsensusfromContig2357_Average_coverage__3.84472refXP_002307979.1 predicted protein Populus trichocarpa91114 bits (285)4e-2457/72 (79%)62/72 (86%) -1
ConsensusfromContig2358_Average_coverage__2.50603gbABF55689.1 putative zinc transporter Triticum aestivum360214 bits (546)3e-54120/210 (57%)136/210 (64%), Gaps = 9/210 (4%) +1
ConsensusfromContig2359_Average_coverage__2.00472refNP_001064484.1 Os10g0379100 Oryza sativa (japonica cultivar-group)436138 bits (348)2e-3175/165 (45%)107/165 (64%), Gaps = 8/165 (4%) -1
EFC_015_A06gbACG32946.1 exosome complex exonuclease RRP41 Zea mays242155 bits (392)2e-3691/165 (55%)103/165 (62%), Gaps = 14/165 (8%) +1
ConsensusfromContig2198_Average_coverage__3.29865refNP_001048506.1 Os02g0815800 Oryza sativa (japonica cultivar-group)197285 bits (729)4e-75145/195 (74%)171/195 (87%) -3