Home   [Orchid Unigene Database]
Library Name:       Contig Lists:  
Contig Information:
Library NameQuery NameLength of query
OrchidUnigeneConsensusfromContig1028_Average_coverage__1.32702


ConsensusfromContig1028_Average_coverage__[Green Color:forward,Red Color:Reverse]
LN:702AACACTTGGAAGTGGAGGAGCAGAAGGATGAATATCAACATTCGATGAAGCCAACTCGGGAATATTGTTAGCATCTGAAGATAACAAATTTGGAGGACAAACAACCATGTTCTCAGAGTTGCTTACACCAACAGAACGTATGGGTGAAGCAGCAGCAAATGGAATATCACTAGTACCACGTGAAATCTCTGATGCAGAAAATCCTGTTGAACTAATTCCATCATAAACATGAGAAATACAGGGGTCTTTGGCCAATAAAAGGTTATCAACAGGTGGCAAACACTGTACCAAATTCAAAGCATATTGTTGAATAGCCTGTGTTTGGACGCAGTAAACTTGCACCACATGTTCACCATCAGGATAGATGTCACTTGTTCCTGTGAGACTCAAAATAGGCATTGTAACATTAAAGTCAGCAATATAGTCCATGCAGGTTGCTGCTGGATGCGGACCATAATCAATATGGACAGCATATATAGCATTCTTCTTAGCATTTGCAAGTAATATAAGGCCTTCTTGAGGCATAACAACGACTTGATTAAAAAAGGCCTCCTCTACTTGGTGTTCTGACGAACATTTTAATTCCAATGTTTGATTACATCTCCATGATTCAGAATCACTGGGTAATAACCAGCCTTCTTCAGCTGAGGAAGTCCATAACTTCAGTTCACGGTTCAATGGACCCGAAGTTAGAAGAACAAT
EFCP018_G01AAACCCTCTGTGAGAGGGTCCCAAATTCTAAAGGGATCAGGGGATGAAGTAGGGTGTAAATTATCACTGCCAAACACTTGGAAGTGGAGGAGCAGAAGGATGAATATCAACATTCGATGAAGCCAACTCGGGAATATTGTTAGCATCTGAAGATAACAAATTTGGAGGACAAACAACCATGTTCTCAGAGTTGCTTACACCAACAGAACGTATGGGTGAAGCAGCAGCAAATGGAATATCACTAGTACCACGTGAAATCTCTGATGCAGAAAATCCTGTTGAACTAATTCCATCATAAACATGAGAAATACAGGGGTCTTTGGCCAATAAAAGGTTATCAACAGGTGGCAAACACTGTACCAAATTCAAAGCATATTGTTGAATAGCCTGTGTTTGGACGCAGTAAACTTGCACCACATGTTCACCATCAGGATAGATGTCACTTGTTCCTGTGAGACTCAAAATAGGCATTGTAACATTAAAGTCAGCAATATAGTCCATGCAGGTTGCTGCTGGATGCGGACCATAATCAATATGGACAGCATATATAGCATTCTTCTTAGCATTTGCAAGTAATATAAGGCCTTCTTGAGGCATAACAACGACTTGATTAAAAAAGGCCTCCTCTACTTGGTGTTCTGACGAACATTTTAATTCCAATGTTTGATTACATCTCCATGATTCAGAATCACTGGGTAATAACCAGCCTTCTTCAGCTGAGGAAGTCCATAACTTCAGTTCACGGTTCAATGGACCCGAAGTTAGAAGAACAAT
FXQQ4OB02GJSSBACCAAATTCAAAGCATATTGTTGAATAGCCTGTGTTTGGACGCAGTAAACTTGCACCACATGTTCACCATCAGGATAGATGTCACTTGTTCCTGTGAGACTCAAAATAGGCATTGTAACATTAAAGTCAGCAATATAGGTCCATGCAGGTTGCTGCTGGATGCGGACCATAATCAATATGGACAGCATATATAGCATTCTTCTTAGCATTTGCAAGTAATATAAG

Sequences View:[ConsensusfromContig1028_Average_coverage__](Contig Seguence)

Sequences View:[ConsensusfromContig1028_Average_coverage__](Singleton Sequence)


Contig Annotation:
GenBankAccession number
(Best hits in the GenBank)
AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
refXP_002308738.1 predicted protein Populus trichocarpa1440257 bits (656)9e-67139/248 (56%)176/248 (70%), Gaps = 17/248 (6%) -1


KEGG PathwayGO
ConsensusfromContig1028_Average_coverage__[1 Pathway]ConsensusfromContig1028_Average_coverage__[11 GoTerm]

Pathway Informations
First-level termsSecond-level termsKEGG pathway NumKEGG pathway NameKEGG pathway Description contig NamelocusNameproject Name
Genetic Information ProcessingFolding, Sorting and Degradation03018RNA degradation[PATH:ath03018]ConsensusfromContig1028AT3G13300OrchidUnigene

GO Informations
Locus NameGo NameGo Class DescriptionsGO idAnotations01
AT3G13300AT3G13300cytosolGO:0005829cytosol
AT3G13300AT3G13300nucleusGO:0005634nucleus
AT3G13300AT3G13300nucleotide bindingGO:0000166nucleotide binding
AT3G13300AT3G13300mRNA catabolic processGO:0006402other cellular processes
AT3G13300AT3G13300mRNA catabolic processGO:0006402other metabolic processes
AT3G13300AT3G13300leaf morphogenesisGO:0009965developmental processes
AT3G13300AT3G13300cytoplasmic mRNA processing bodyGO:0000932other cytoplasmic components
AT3G13300AT3G13300cytoplasmic mRNA processing bodyGO:0000932other intracellular components
AT3G13300AT3G13300protein homodimerization activityGO:0042803protein binding
AT3G13300AT3G13300deadenylation-independent decapping of nuclear-transcribed mRNAGO:0031087other cellular processes
AT3G13300AT3G13300deadenylation-independent decapping of nuclear-transcribed mRNAGO:0031087other metabolic processes

Gene Network Informations
Gene NetworkInteract with..
ConsensusfromContig1028[interact with..]ConsensusfromContig2971
FXQQ4OB02FXSY3
Singletons26154
Singletons36077
Singletons4673
ConsensusfromContig1028
ConsensusfromContig2217
contig06769
Singletons13555
Singletons19245
Singletons39869
Singletons4050
Singletons48732

Query NameLength of queryGenBankAccession number(Best hits in the GenBank)AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
ConsensusfromContig2971_Average_coverage__2.50400gbACF06576.1 ubiquitin fusion degradation protein Elaeis guineensis320146 bits (368)8e-3479/126 (62%)93/126 (73%), Gaps = 1/126 (0%) -3
FXQQ4OB02FXSY3gbABB29959.1 ubiquitin fusion-degradation protein-like Solanum tuberosum31587.4 bits (215)2e-1840/47 (85%)41/47 (87%) -2
Singletons26154110gbACF06576.1 ubiquitin fusion degradation protein Elaeis guineensis32073.9 bits (180)5e-1232/36 (88%)35/36 (97%) -2
Singletons36077181refXP_002513003.1 ubiquitin fusion degradaton protein, putative Ricinus communis356114 bits (286)3e-2455/59 (93%)57/59 (96%) +3
Singletons4673646gbACF06576.1 ubiquitin fusion degradation protein Elaeis guineensis320230 bits (586)9e-59106/120 (88%)114/120 (95%) -1
Singletons46730511embCBI21383.1 unnamed protein product Vitis vinifera333137 bits (344)6e-3171/111 (63%)81/111 (72%), Gaps = 2/111 (1%) +1
Singletons46731511gbABF95605.1 Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed Oryza sativa (japonica cultivar-group)722126 bits (316)4e-2867/108 (62%)81/108 (75%) -1
Singletons46732511[No hits found]
Singletons46734511[No hits found]
Singletons46735511refXP_002512262.1 Pre-rRNA-processing protein TSR2, putative Ricinus communis213130 bits (328)4e-2975/168 (44%)99/168 (58%), Gaps = 25/168 (14%) +3
Singletons46736511refXP_002516957.1 ring finger protein, putative Ricinus communis29294.4 bits (233)4e-1842/78 (53%)53/78 (67%) -3
Singletons46737512refXP_002312794.1 predicted protein Populus trichocarpa117171 bits (433)3e-4189/108 (82%)95/108 (87%) +3
Singletons46738512embCBI38352.1 unnamed protein product Vitis vinifera22594.7 bits (234)3e-1859/143 (41%)76/143 (53%), Gaps = 11/143 (7%) -2
ConsensusfromContig1028_Average_coverage__1.32702refXP_002308738.1 predicted protein Populus trichocarpa1440257 bits (656)9e-67139/248 (56%)176/248 (70%), Gaps = 17/248 (6%) -1
ConsensusfromContig2217_Average_coverage__4.461213embCBI39820.1 unnamed protein product Vitis vinifera1270330 bits (845)3e-88173/268 (64%)204/268 (76%), Gaps = 2/268 (0%) -1
contig06769488embCBI39820.1 unnamed protein product Vitis vinifera1270107 bits (268)3e-4161/97 (62%)73/97 (75%), Gaps = 2/97 (2%) -1
Singletons135553600refXP_002308738.1 predicted protein Populus trichocarpa1440923 bits (2386)0.0529/1078 (49%)695/1078 (64%), Gaps = 21/1078 (1%) -1
Singletons19245871refNP_001047969.1 Os02g0722800 Oryza sativa (japonica cultivar-group)1339179 bits (453)4e-43108/200 (54%)116/200 (58%), Gaps = 26/200 (13%) +2
Singletons39869235refNP_001047969.1 Os02g0722800 Oryza sativa (japonica cultivar-group)1339124 bits (311)3e-2758/78 (74%)67/78 (85%) -1
Singletons40502830refXP_002269564.1 PREDICTED: hypothetical protein Vitis vinifera1362724 bits (1868)0.0378/696 (54%)499/696 (71%), Gaps = 11/696 (1%) -1
Singletons40500246[No hits found]
Singletons40501246refNP_001053518.1 Os04g0555600 Oryza sativa (japonica cultivar-group)1285102 bits (254)1e-2054/82 (65%)67/82 (81%) +1
Singletons40503246[No hits found]
Singletons40504246[No hits found]
Singletons40505246[No hits found]
Singletons40506246refXP_002280689.1 PREDICTED: hypothetical protein Vitis vinifera27172.4 bits (176)2e-1139/67 (58%)41/67 (61%), Gaps = 2/67 (2%) -2
Singletons40507246refXP_002525580.1 Xylem serine proteinase 1 precursor, putative Ricinus communis77775.9 bits (185)1e-1239/80 (48%)55/80 (68%) +2
Singletons40508246dbjBAB90156.1 selenium-binding protein-like Oryza sativa Japonica Group517119 bits (298)1e-2555/81 (67%)62/81 (76%) +1
Singletons40509246[No hits found]
Singletons487321099embCBI39820.1 unnamed protein product Vitis vinifera1270368 bits (945)e-100184/297 (61%)237/297 (79%), Gaps = 2/297 (0%) +1