Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	FPTEVCPM043_D06_PDNR-F	975

Contig Map:

(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPTEVCPM043_D06_PDNR-F](Singleton Sequence)

FPTEVCPM043_D06_PDNR-F 975  bases 
TCCCGCTTGCTGATGCGCGCAACCGCCGCCGCCGGAATCCGTTCAGCGGCGAACCCCGGAATCCCAGCCGCTTCTCAGGCCTTCTCCACCGAAGTTGCGGAGGCGCCGGCGATAGATTCGTCGTTCCTCGAGGCATGGAAGAAGGCCGCTCCCAACATCGACCCCCCGAAGACTCCGCTCGCATTTATGAAGCCGCGGCCACCAACTCCTTCCTCCATCCCCTCCAAGCTCACCCTCAACTTCGTCCTTCCTTACCAATCCGAGATCTCCAACAAGGAGGTCGACATGGCGATTATACCCGCAACAACCGGGCAAATGGGTGTTCTACCCGGCCATGTGGCGACCATAGCAGAACTCAAACCTGGCGTTCTCTCAGTGCACAACGGAAATGATGTCACCAAATACTTTGTCAGCAGCGGCTTTGCGTTTATCCATGCAAACTCTTACGCCGATATCGTCGCCGTTGAGGCTGTTCCCCTCGACCAAATCGATTCAAGCCTGGTTCAAAAAGGACTGTCCGAGTTCACTCAGAAGCTCAACTCAGCCGTCACCGACCTCGAGAAGGCCGAAGCTCAGGTCGGAGTTGACGTACACAGCGCTCTCAATGCTGCACTTACTGGGTGAAAGAAGACTTTCTTGTTTGAGAGAGAATCTCCATGGACTCAAGTGAGGGAGGCTGAATAATTTGTTGGTGGAATTGAAATGTTTGTTTTATGCTATTATTGGTTACAAATTTGCTTTGTATGTGCTTGTAGCTTCAACAATTTTATCTTGAAATAGAGATTTTGAGAGAGGAATGTCTGCAGTGAAGCAGCTGAAATAACTGTTTTTAATTCTGGGCATTCTGAATTCATTTTGAACCAGCAGAAATAATATTTGTAGGATATTTAATTTGCTGAGAAATACTTTGATGATTGACAGACAATATATATATGGTTTTAGTTATCACCAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002326840.1	predicted protein	Populus trichocarpa	198	304 bits (778)	1e-80	151/183 (82%)	166/183 (90%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[32 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Energy Metabolism	00190	Oxidative phosphorylation	[PATH:ath00190]	FPTEVCPM043_D06_PDNR-F	AT5G47030	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G47030	AT5G47030	mitochondrion	GO:0005739	mitochondria
AT5G47030	AT5G47030	response to salt stress	GO:0009651	response to stress
AT5G47030	AT5G47030	response to salt stress	GO:0009651	response to abiotic or biotic stimulus
AT5G47030	AT5G47030	mitochondrial proton-transporting ATP synthase complex	GO:0005753	mitochondria
AT5G47030	AT5G47030	mitochondrial proton-transporting ATP synthase complex	GO:0005753	other membranes
AT5G47030	AT5G47030	mitochondrial proton-transporting ATP synthase complex	GO:0005753	other cytoplasmic components
AT5G47030	AT5G47030	mitochondrial proton-transporting ATP synthase complex	GO:0005753	other intracellular components
AT5G47030	AT5G47030	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	mitochondria
AT5G47030	AT5G47030	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other membranes
AT5G47030	AT5G47030	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other cytoplasmic components
AT5G47030	AT5G47030	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other intracellular components
AT5G47030	AT5G47030	mitochondrion	GO:0005739	mitochondria
AT5G47030	AT5G47030	mitochondrion	GO:0005739	mitochondria
AT5G47030	AT5G47030	mitochondrion	GO:0005739	mitochondria
AT5G47030	AT5G47030	zinc ion binding	GO:0008270	other binding
AT5G47030	AT5G47030	"hydrogen ion transporting ATP synthase activity, rotational mechanism"	GO:0046933	transporter activity
AT5G47030	AT5G47030	mitochondrion	GO:0005739	mitochondria
AT5G47030	AT5G47030	response to salt stress	GO:0009651	response to stress
AT5G47030	AT5G47030	response to salt stress	GO:0009651	response to abiotic or biotic stimulus
AT5G47030	AT5G47030	mitochondrial proton-transporting ATP synthase complex	GO:0005753	mitochondria
AT5G47030	AT5G47030	mitochondrial proton-transporting ATP synthase complex	GO:0005753	other membranes
AT5G47030	AT5G47030	mitochondrial proton-transporting ATP synthase complex	GO:0005753	other cytoplasmic components
AT5G47030	AT5G47030	mitochondrial proton-transporting ATP synthase complex	GO:0005753	other intracellular components
AT5G47030	AT5G47030	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	mitochondria
AT5G47030	AT5G47030	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other membranes
AT5G47030	AT5G47030	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other cytoplasmic components
AT5G47030	AT5G47030	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other intracellular components
AT5G47030	AT5G47030	mitochondrion	GO:0005739	mitochondria
AT5G47030	AT5G47030	mitochondrion	GO:0005739	mitochondria
AT5G47030	AT5G47030	mitochondrion	GO:0005739	mitochondria
AT5G47030	AT5G47030	zinc ion binding	GO:0008270	other binding
AT5G47030	AT5G47030	"hydrogen ion transporting ATP synthase activity, rotational mechanism"	GO:0046933	transporter activity

Gene Network Informations
Gene Network	Interact with..
FPTEVCPM043_D06_PDNR-F[interact with..]	FPTEVCPM013_F02_PDNR-F Contig0655 Contig0651 Contig1020

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM013_F02_PDNR-F	680	gb	EAZ08899.1	hypothetical protein OsI_31164	Oryza sativa Indica Group	1094	155 bits (393)	2e-36	75/139 (53%)	95/139 (68%)	+3
Contig0655	1207	gb	ACF06556.1	mitochondrial ATP synthase gamma chain	Elaeis guineensis	323	496 bits (1278)	e-138	262/323 (81%)	284/323 (87%), Gaps = 1/323 (0%)	+3
Contig0651	943	ref	XP_002529702.1	ATP synthase D chain, mitochondrial, putative	Ricinus communis	168	273 bits (699)	1e-71	131/150 (87%)	141/150 (94%)	+1
Contig1020	1281	ref	NP_001043900.1	Os01g0685800	Oryza sativa (japonica cultivar-group)	557	541 bits (1394)	e-152	274/285 (96%)	281/285 (98%)	+2