Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig1436	1006

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig1436):
FPTEVCPM086_C10_PDNR-F:
FPTEVCPM082_E05_PDNR-F:

Sequences View:[Contig1436](Contig Seguence)

1006 bases 
GAGCTTTAACGATGGCGCTGAGAGGTGACTGGGTTTACGAGAACAACGGAGGTACATGCGTGGCGATCGCCGGAACCGATTACTGTGTGGTGGCCGCAGACACCCGTCTTTCCGTCGGATACAGTATATACACACGCGACTACTCTAAGATCTGCAAGCTAGCCGACAAATGTGTATTGGCATCTTCTGGATTCCAGGGAGATATGAAAGCCCTGCAGAAGAATTTGGCTGCAAAGCACCTTATATATCAACATCAACACAATAAACAAATGAGCTGTCCTGCAATGGCTCGGCTTCTTTCAAATACTCTTTACTACAAAAGGTTCTTCCCTTACTATACATTCAATATTCCAGGTGGGCTGGACAATGAAGGGAAAGGTTGTGTTTATTCATATGATGCTGTTGGATCCTATGAGAGGGTGGGGTACAGTTGCCAAGGAACTGGTGGAACCCTTATAATGCCAGTTTTAGACAACCAGCTGAAGTCCCCTAGTCCTTTGTTATTACCTGCTAGGGATGCTGTGACGCCACTCTCTGAATCTGAGGCAGTTGATCTAGTCAAAGATGTTTTTGCATCAGCTACAGAAAGAGATATATACACTGGAGATAAGCTAGAAATTATCATTGTTAATGCAACGGGTATCCGACAGGAGTTTATTGAACTGAGGAAGGATTAGAAAACCAGAGGTGCAGATCTGCTGGAAATTTGGAAGATAAATATCCTCCAACCAAACTTAAATTAATCTTCCCTTTCTATTTTGCCAAAATATTTAAATCTCAGCTTATTTCCTTAGATTCTTACTGCATCAAGTTGAGGATTTTATTGGTCTTTTTTCTGGTTTTGAAACATCACTACTGCAGTGATTTCTTTTTTCTTCTTTTTGCTGTGAGAATTGTGTTGCCTCAGACATTTATTTGTGATGAATGCTATTCAATTTTAGCGCTATAAATGTTTAATGGTGTAAAATTTACGGACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig1436](Singleton Sequence)

Contig1436 1006  bases 
GAGCTTTAACGATGGCGCTGAGAGGTGACTGGGTTTACGAGAACAACGGAGGTACATGCGTGGCGATCGCCGGAACCGATTACTGTGTGGTGGCCGCAGACACCCGTCTTTCCGTCGGATACAGTATATACACACGCGACTACTCTAAGATCTGCAAGCTAGCCGACAAATGTGTATTGGCATCTTCTGGATTCCAGGGAGATATGAAAGCCCTGCAGAAGAATTTGGCTGCAAAGCACCTTATATATCAACATCAACACAATAAACAAATGAGCTGTCCTGCAATGGCTCGGCTTCTTTCAAATACTCTTTACTACAAAAGGTTCTTCCCTTACTATACATTCAATATTCCAGGTGGGCTGGACAATGAAGGGAAAGGTTGTGTTTATTCATATGATGCTGTTGGATCCTATGAGAGGGTGGGGTACAGTTGCCAAGGAACTGGTGGAACCCTTATAATGCCAGTTTTAGACAACCAGCTGAAGTCCCCTAGTCCTTTGTTATTACCTGCTAGGGATGCTGTGACGCCACTCTCTGAATCTGAGGCAGTTGATCTAGTCAAAGATGTTTTTGCATCAGCTACAGAAAGAGATATATACACTGGAGATAAGCTAGAAATTATCATTGTTAATGCAACGGGTATCCGACAGGAGTTTATTGAACTGAGGAAGGATTAGAAAACCAGAGGTGCAGATCTGCTGGAAATTTGGAAGATAAATATCCTCCAACCAAACTTAAATTAATCTTCCCTTTCTATTTTGCCAAAATATTTAAATCTCAGCTTATTTCCTTAGATTCTTACTGCATCAAGTTGAGGATTTTATTGGTCTTTTTTCTGGTTTTGAAACATCACTACTGCAGTGATTTCTTTTTTCTTCTTTTTGCTGTGAGAATTGTGTTGCCTCAGACATTTATTTGTGATGAATGCTATTCAATTTTAGCGCTATAAATGTTTAATGGTGTAAAATTTACGGACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACG27794.1	proteasome subunit beta type 1	Zea mays	221	390 bits (1003)	e-107	186/221 (84%)	205/221 (92%)	+3

KEGG Pathway	GO
Contig1436[1 Pathway]	Contig1436[12 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	Contig1436	AT3G60820	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G60820	AT3G60820	chloroplast	GO:0009507	chloroplast
AT3G60820	AT3G60820	plasma membrane	GO:0005886	plasma membrane
AT3G60820	AT3G60820	proteasome core complex	GO:0005839	other intracellular components
AT3G60820	AT3G60820	proteasome core complex	GO:0005839	other intracellular components
AT3G60820	AT3G60820	peptidase activity	GO:0008233	hydrolase activity
AT3G60820	AT3G60820	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT3G60820	AT3G60820	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT3G60820	AT3G60820	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT3G60820	AT3G60820	"defense response to fungus, incompatible interaction"	GO:0009817	response to stress
AT3G60820	AT3G60820	"defense response to fungus, incompatible interaction"	GO:0009817	response to abiotic or biotic stimulus
AT3G60820	AT3G60820	proteasome complex	GO:0000502	other intracellular components
AT3G60820	AT3G60820	plasma membrane	GO:0005886	plasma membrane

Gene Network Informations
Gene Network	Interact with..
Contig1436[interact with..]	FPTEVCPM066_D02_PDNR-F Contig1475 Contig1199 FPTEVCPM026_D09_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM066_D02_PDNR-F	960	ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	411 bits (1056)	e-113	209/223 (93%)	217/223 (97%)	+3
Contig1475	1369	gb	ABN08957.1	H+-transporting two-sector ATPase, C (AC39) subunit	Medicago truncatula	351	680 bits (1755)	0.0	331/351 (94%)	343/351 (97%)	+2
Contig1199	1058	ref	XP_002527995.1	proteasome subunit beta type 6,9, putative	Ricinus communis	231	394 bits (1012)	e-108	198/231 (85%)	211/231 (91%)	+3
FPTEVCPM026_D09_PDNR-F	1175	gb	ACG40493.1	proteasome subunit beta type 7-A precursor	Zea mays	273	452 bits (1163)	e-126	216/241 (89%)	233/241 (96%)	+1