Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig1059	1110

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig1059):
FPTEVCPM086_G04_PDNR-F:
FPTEVCPM017_C02_pDNR-F:

Sequences View:[Contig1059](Contig Seguence)

1110 bases 
GTCCCTTCCTCAGCCCTTCGATCTCCTATCAATCGATTCAATCATCGTTTTCTTAATCTCTGCCTACCTTCGCCGTCAACAATCGTCACTGATTCGATGGGAAGGGTGACAGAAACTGCAGTCTCTGACGAAGAATCGGCGATGGACGCCATCCAGAGACGGCTAATGTTCGAGGACGAGTGTATTTTGGTGGATGAGCATGACAATGTTGTTGGTCATGAGTCTAAATACAACTGCCATTTGATGGAAAAGATTGAAAAGGAAAATTTGCTTCACAGGGCTTTTAGCGTTTTCCTGTTCAATTCGAACTATGAGTTGCTGCTTCAGCAAAGATCTGCTACAAAAGTCACTTTTCCTTTAGTCTGGACAAACACCTGCTGCAGCCATCCTCTCTATCGTGAATCAGAGCTCATCAAAGAGAACTTCCTTGGCGTCAGAAACGCTGCACAAAGGAAGCTGCTTGATGAACTGGGCATTCCCCCCGAACACCTGCCTGTGGATGAATTCATTCCTGTCGGCCGCATGCTTTATAAGGCTCCTTCAGATGGAAAATGGGGCGAGCATGAACTTGATTATTTGCTGTTCATCGTTCGTGATGTCAATGTGAATCCAAATCCAGAAGAAGTTGCGGACATTATGTATGTCGATAAGGACAAACTGAAGGAGCTGCTGAGGAAAGCCGACGCCGGCGAGGAGGGCGTAAAACTCTCACCTTGGTTCAGGCTTGTCGTAGACAATTTCCTGATGAAGTGGTGGGAGCATGTGGAGAAAGGTACTCTACATGTGGCTGCTGACATGAAAACTATTCATAAGCTGACATGAAAATTTAGGCTACATTATCTACTGCCTACCAATCATGAGCTGCTGAGGTTTTTGTTCAAATTTTTGTTGTATTGGTATTGGGGAGCCTTATTGGCTTGCTTTTTATCTTTGCATGCTGTTTTCTTTGATAATTTAAAGTGTAGTGAATGTTTGTGGGACTAAATTATTTACAAGCATATGTGCTTTTGGAGAAACATGAAAGATATGTTTTTTTTTTTTTGGAAAAGTTTTATAATAACATCATGATATGTTTTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig1059](Singleton Sequence)

Contig1059 1110  bases 
GTCCCTTCCTCAGCCCTTCGATCTCCTATCAATCGATTCAATCATCGTTTTCTTAATCTCTGCCTACCTTCGCCGTCAACAATCGTCACTGATTCGATGGGAAGGGTGACAGAAACTGCAGTCTCTGACGAAGAATCGGCGATGGACGCCATCCAGAGACGGCTAATGTTCGAGGACGAGTGTATTTTGGTGGATGAGCATGACAATGTTGTTGGTCATGAGTCTAAATACAACTGCCATTTGATGGAAAAGATTGAAAAGGAAAATTTGCTTCACAGGGCTTTTAGCGTTTTCCTGTTCAATTCGAACTATGAGTTGCTGCTTCAGCAAAGATCTGCTACAAAAGTCACTTTTCCTTTAGTCTGGACAAACACCTGCTGCAGCCATCCTCTCTATCGTGAATCAGAGCTCATCAAAGAGAACTTCCTTGGCGTCAGAAACGCTGCACAAAGGAAGCTGCTTGATGAACTGGGCATTCCCCCCGAACACCTGCCTGTGGATGAATTCATTCCTGTCGGCCGCATGCTTTATAAGGCTCCTTCAGATGGAAAATGGGGCGAGCATGAACTTGATTATTTGCTGTTCATCGTTCGTGATGTCAATGTGAATCCAAATCCAGAAGAAGTTGCGGACATTATGTATGTCGATAAGGACAAACTGAAGGAGCTGCTGAGGAAAGCCGACGCCGGCGAGGAGGGCGTAAAACTCTCACCTTGGTTCAGGCTTGTCGTAGACAATTTCCTGATGAAGTGGTGGGAGCATGTGGAGAAAGGTACTCTACATGTGGCTGCTGACATGAAAACTATTCATAAGCTGACATGAAAATTTAGGCTACATTATCTACTGCCTACCAATCATGAGCTGCTGAGGTTTTTGTTCAAATTTTTGTTGTATTGGTATTGGGGAGCCTTATTGGCTTGCTTTTTATCTTTGCATGCTGTTTTCTTTGATAATTTAAAGTGTAGTGAATGTTTGTGGGACTAAATTATTTACAAGCATATGTGCTTTTGGAGAAACATGAAAGATATGTTTTTTTTTTTTTGGAAAAGTTTTATAATAACATCATGATATGTTTTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACV74320.1	isopentenyl diphosphate isomerase	Bupleurum chinense	319	424 bits (1089)	e-116	204/245 (83%)	224/245 (91%), Gaps = 1/245 (0%)	+1

KEGG Pathway	GO
Contig1059[1 Pathway]	Contig1059[27 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Metabolism of Terpenoids and Polyketides	00900	Terpenoid backbone biosynthesis	[PATH:ath00900]	Contig1059	AT3G02780	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G02780	AT3G02780	chloroplast	GO:0009507	chloroplast
AT3G02780	AT3G02780	cytosol	GO:0005829	cytosol
AT3G02780	AT3G02780	mitochondrion	GO:0005739	mitochondria
AT3G02780	AT3G02780	isopentenyl-diphosphate delta-isomerase activity	GO:0004452	other enzyme activity
AT3G02780	AT3G02780	chlorophyll biosynthetic process	GO:0015995	other cellular processes
AT3G02780	AT3G02780	chlorophyll biosynthetic process	GO:0015995	other metabolic processes
AT3G02780	AT3G02780	isoprenoid biosynthetic process	GO:0008299	other cellular processes
AT3G02780	AT3G02780	isoprenoid biosynthetic process	GO:0008299	other metabolic processes
AT3G02780	AT3G02780	flower development	GO:0009908	developmental processes
AT3G02780	AT3G02780	chloroplast	GO:0009507	chloroplast
AT3G02780	AT3G02780	cytosol	GO:0005829	cytosol
AT3G02780	AT3G02780	mitochondrion	GO:0005739	mitochondria
AT3G02780	AT3G02780	isopentenyl-diphosphate delta-isomerase activity	GO:0004452	other enzyme activity
AT3G02780	AT3G02780	chlorophyll biosynthetic process	GO:0015995	other cellular processes
AT3G02780	AT3G02780	chlorophyll biosynthetic process	GO:0015995	other metabolic processes
AT3G02780	AT3G02780	isoprenoid biosynthetic process	GO:0008299	other cellular processes
AT3G02780	AT3G02780	isoprenoid biosynthetic process	GO:0008299	other metabolic processes
AT3G02780	AT3G02780	flower development	GO:0009908	developmental processes
AT3G02780	AT3G02780	chloroplast	GO:0009507	chloroplast
AT3G02780	AT3G02780	cytosol	GO:0005829	cytosol
AT3G02780	AT3G02780	mitochondrion	GO:0005739	mitochondria
AT3G02780	AT3G02780	isopentenyl-diphosphate delta-isomerase activity	GO:0004452	other enzyme activity
AT3G02780	AT3G02780	chlorophyll biosynthetic process	GO:0015995	other cellular processes
AT3G02780	AT3G02780	chlorophyll biosynthetic process	GO:0015995	other metabolic processes
AT3G02780	AT3G02780	isoprenoid biosynthetic process	GO:0008299	other cellular processes
AT3G02780	AT3G02780	isoprenoid biosynthetic process	GO:0008299	other metabolic processes
AT3G02780	AT3G02780	flower development	GO:0009908	developmental processes

Gene Network Informations
Gene Network	Interact with..
Contig1059[interact with..]	Not found!