Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig0981	1185

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig0981):
FPTEVCPM027_A11_PDNR-F:
FPTEVCPM084_F06_PDNR-F:
FPTEVCPM067_E08_PDNR-F:

Sequences View:[Contig0981](Contig Seguence)

1185 bases 
AAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGGGACTACTTTTCATTCCATCCAATCCCTCCTCTCTCCTCGATGGCCCTCCTCCGCCGCGTCGTCGCCTCGTTCACCATCCTGGCGGAGCGCACCGCCGTTACAACCATAGCAGCCCGCCTTGTTCCAACACAGCGGAATTCCTCGCAGGCGGAGCCTGCCTCATCGAAGACGAAGAAGATGAAGACGTTCTCGATCTACCGTTGGAATCCCGACAATCCGACGAAGCCGCAGCTCCGTGACTACGACTTGGATCTCAGCGAGTGCGGGCCGATGGTTCTCGATGCATTGATCAAGATAAAAAATGAGATGGATCCGAGCCTCACCTTTCGGCGATCGTGCCGCGAGGGGATCTGCGGTTCCTGCGCCATGAATATGGATGGAGACAATGGGCTGGCGTGCCTCACTAAGATCCGCTCGGAAAGCGGTACGGCAACTACGATCACGCCGCTGCCGCACATGTTTGTCATCAAGGATCTTGTGGTGGACATGACCAACTTCTACGCGCAGTATAAGAGCGTGGAACCGTGGCTGAAGCGCAAGGATCCGCCTGCAGTGCCGGGGAAGGAGAACCTCCAGAGCAAGAAGGATCGGGCGAAGCTGGATGGCATGTACGAGTGCATTCTTTGTGCTTGTTGTACCACGTCCTGCCCTAGCTACTGGTGGAACCCGGAGCCCTACCTTGGCCCGGCCGCCCTTCTACAGGCCAATAGATGGATTCAAGACAGCCGCGACCAGTATACAAAGGAACGTCTGGATGCCATTAATGATGAATTTAAACTGTATCGGTGCCATACCATAAAGAACTGTGTACACGCCTGTCCAAAGGGATTAAATCCTGCCAAGCAGATTGAATCAATTAAAAAGCTTCAGCTCAAGCAGTAGCTGCTCTTCATATGTTTTTTACCGACTCCAATTCCTCCGATCAAACCTGTATTTTCTCTGCAGCTTCTGCTGAAGCCCCGAATCTTATTGTTTGGGAAAATAAAAGGCTTTTATACTCTACTTTCTGAAAATAAGAGGCTATTCAGTCAGCTAATATGTTTGATGCTTTATGAAATGTGTGGTGAACAGCAGTTGTGTAGGTGGTCATCTTCTTTCTTTATTGAGATAATTATGAAAGCAAATAGTTAGAGAAATTACTTAC

Sequences View:[Contig0981](Singleton Sequence)

Contig0981 1185  bases 
AAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGGGACTACTTTTCATTCCATCCAATCCCTCCTCTCTCCTCGATGGCCCTCCTCCGCCGCGTCGTCGCCTCGTTCACCATCCTGGCGGAGCGCACCGCCGTTACAACCATAGCAGCCCGCCTTGTTCCAACACAGCGGAATTCCTCGCAGGCGGAGCCTGCCTCATCGAAGACGAAGAAGATGAAGACGTTCTCGATCTACCGTTGGAATCCCGACAATCCGACGAAGCCGCAGCTCCGTGACTACGACTTGGATCTCAGCGAGTGCGGGCCGATGGTTCTCGATGCATTGATCAAGATAAAAAATGAGATGGATCCGAGCCTCACCTTTCGGCGATCGTGCCGCGAGGGGATCTGCGGTTCCTGCGCCATGAATATGGATGGAGACAATGGGCTGGCGTGCCTCACTAAGATCCGCTCGGAAAGCGGTACGGCAACTACGATCACGCCGCTGCCGCACATGTTTGTCATCAAGGATCTTGTGGTGGACATGACCAACTTCTACGCGCAGTATAAGAGCGTGGAACCGTGGCTGAAGCGCAAGGATCCGCCTGCAGTGCCGGGGAAGGAGAACCTCCAGAGCAAGAAGGATCGGGCGAAGCTGGATGGCATGTACGAGTGCATTCTTTGTGCTTGTTGTACCACGTCCTGCCCTAGCTACTGGTGGAACCCGGAGCCCTACCTTGGCCCGGCCGCCCTTCTACAGGCCAATAGATGGATTCAAGACAGCCGCGACCAGTATACAAAGGAACGTCTGGATGCCATTAATGATGAATTTAAACTGTATCGGTGCCATACCATAAAGAACTGTGTACACGCCTGTCCAAAGGGATTAAATCCTGCCAAGCAGATTGAATCAATTAAAAAGCTTCAGCTCAAGCAGTAGCTGCTCTTCATATGTTTTTTACCGACTCCAATTCCTCCGATCAAACCTGTATTTTCTCTGCAGCTTCTGCTGAAGCCCCGAATCTTATTGTTTGGGAAAATAAAAGGCTTTTATACTCTACTTTCTGAAAATAAGAGGCTATTCAGTCAGCTAATATGTTTGATGCTTTATGAAATGTGTGGTGAACAGCAGTTGTGTAGGTGGTCATCTTCTTTCTTTATTGAGATAATTATGAAAGCAAATAGTTAGAGAAATTACTTAC

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
emb	CAD62367.1	succinate dehydrogenase	Triticum aestivum	281	437 bits (1125)	e-121	209/279 (74%)	239/279 (85%), Gaps = 3/279 (1%)	+3

KEGG Pathway	GO
Contig0981[2 Pathway]	Contig0981[40 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Carbohydrate Metabolism	00020	Citrate cycle (TCA cycle)	[PATH:ath00020]	Contig0981	AT5G40650	FPTEVCPM
Metabolism	Energy Metabolism	00190	Oxidative phosphorylation	[PATH:ath00190]	Contig0981	AT5G40650	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	electron carrier activity	GO:0009055	other molecular functions
AT5G40650	AT5G40650	succinate dehydrogenase activity	GO:0000104	other enzyme activity
AT5G40650	AT5G40650	zinc ion binding	GO:0008270	other binding
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	other cellular processes
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	other metabolic processes
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	electron transport or energy pathways
AT5G40650	AT5G40650	succinate dehydrogenase complex	GO:0045281	other intracellular components
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	electron carrier activity	GO:0009055	other molecular functions
AT5G40650	AT5G40650	succinate dehydrogenase activity	GO:0000104	other enzyme activity
AT5G40650	AT5G40650	zinc ion binding	GO:0008270	other binding
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	other cellular processes
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	other metabolic processes
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	electron transport or energy pathways
AT5G40650	AT5G40650	succinate dehydrogenase complex	GO:0045281	other intracellular components
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	electron carrier activity	GO:0009055	other molecular functions
AT5G40650	AT5G40650	succinate dehydrogenase activity	GO:0000104	other enzyme activity
AT5G40650	AT5G40650	zinc ion binding	GO:0008270	other binding
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	other cellular processes
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	other metabolic processes
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	electron transport or energy pathways
AT5G40650	AT5G40650	succinate dehydrogenase complex	GO:0045281	other intracellular components
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	mitochondrion	GO:0005739	mitochondria
AT5G40650	AT5G40650	electron carrier activity	GO:0009055	other molecular functions
AT5G40650	AT5G40650	succinate dehydrogenase activity	GO:0000104	other enzyme activity
AT5G40650	AT5G40650	zinc ion binding	GO:0008270	other binding
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	other cellular processes
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	other metabolic processes
AT5G40650	AT5G40650	"mitochondrial electron transport, succinate to ubiquinone"	GO:0006121	electron transport or energy pathways
AT5G40650	AT5G40650	succinate dehydrogenase complex	GO:0045281	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig0981[interact with..]	Contig0290

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0290	515	gb	ACF06566.1	catalase 2	Elaeis guineensis	492	115 bits (287)	2e-24	50/63 (79%)	56/63 (88%)	+1