Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig0034	760

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig0034):
FPTEVCPM021_A05_pDNR-F:
FPTEVCPM018_C08_PDNR-F:

Sequences View:[Contig0034](Contig Seguence)

Sequences View:[Contig0034](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002323429.1	predicted protein	Populus trichocarpa	151	184 bits (468)	6e-45	92/117 (78%)	96/117 (82%)	+1

KEGG Pathway	GO
Contig0034[1 Pathway]	Contig0034[35 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	Contig0034	AT3G55280	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G55280	AT3G55280	membrane	GO:0016020	other membranes
AT3G55280	AT3G55280	RNA binding	GO:0003723	DNA or RNA binding
AT3G55280	AT3G55280	nucleotide binding	GO:0000166	nucleotide binding
AT3G55280	AT3G55280	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G55280	AT3G55280	cytosolic ribosome	GO:0022626	cytosol
AT3G55280	AT3G55280	cytosolic ribosome	GO:0022626	ribosome
AT3G55280	AT3G55280	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G55280	AT3G55280	cytosolic ribosome	GO:0022626	other intracellular components
AT3G55280	AT3G55280	intracellular	GO:0005622	other intracellular components
AT3G55280	AT3G55280	RNA binding	GO:0003723	DNA or RNA binding
AT3G55280	AT3G55280	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G55280	AT3G55280	response to cold	GO:0009409	response to stress
AT3G55280	AT3G55280	response to cold	GO:0009409	response to abiotic or biotic stimulus
AT3G55280	AT3G55280	response to oxidative stress	GO:0006979	response to stress
AT3G55280	AT3G55280	translation	GO:0006412	protein metabolism
AT3G55280	AT3G55280	translation	GO:0006412	other cellular processes
AT3G55280	AT3G55280	translation	GO:0006412	other metabolic processes
AT3G55280	AT3G55280	response to high light intensity	GO:0009644	response to abiotic or biotic stimulus
AT3G55280	AT3G55280	ribosome biogenesis	GO:0042254	cell organization and biogenesis
AT3G55280	AT3G55280	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT3G55280	AT3G55280	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT3G55280	AT3G55280	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT3G55280	AT3G55280	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT3G55280	AT3G55280	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT3G55280	AT3G55280	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT3G55280	AT3G55280	cytosolic large ribosomal subunit	GO:0022625	other intracellular components
AT3G55280	AT3G55280	cytosolic large ribosomal subunit	GO:0022625	other intracellular components
AT3G55280	AT3G55280	membrane	GO:0016020	other membranes
AT3G55280	AT3G55280	RNA binding	GO:0003723	DNA or RNA binding
AT3G55280	AT3G55280	nucleotide binding	GO:0000166	nucleotide binding
AT3G55280	AT3G55280	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G55280	AT3G55280	membrane	GO:0016020	other membranes
AT3G55280	AT3G55280	RNA binding	GO:0003723	DNA or RNA binding
AT3G55280	AT3G55280	nucleotide binding	GO:0000166	nucleotide binding
AT3G55280	AT3G55280	structural constituent of ribosome	GO:0003735	structural molecule activity

Gene Network Informations
Gene Network	Interact with..
Contig0034[interact with..]	FPTEVCPM089_C12_PDNR-F Contig0860 FPTEVCPM040_E01_PDNR-F Contig1208 FPTEVCPM046_H03_PDNR-F Contig1072 FPTEVCPM071_C04_PDNR-F Contig0151 Contig0463 FPTEVCPM033_A03_PDNR-F Contig0663 FPTEVCPM078_F10_PDNR-F FPTEVCPM019_D05_pNDR-F Contig1454 FPTEVCPM030_B02_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM089_C12_PDNR-F	426	ref	NP_001045607.1	Os02g0103700	Oryza sativa (japonica cultivar-group)	192	156 bits (394)	8e-37	76/85 (89%)	85/85 (100%)	+1
Contig0860	1378	ref	XP_002524302.1	60S ribosomal protein L3, putative	Ricinus communis	389	701 bits (1810)	0.0	334/381 (87%)	358/381 (93%)	+3
FPTEVCPM040_E01_PDNR-F	1018	gb	ACF06589.1	ribosomal protein	Elaeis guineensis	182	308 bits (790)	5e-82	154/183 (84%)	163/183 (89%)	+2
Contig1208	793	gb	ABA40430.1	ribosomal protein L27a-like protein	Solanum tuberosum	148	253 bits (645)	2e-65	122/149 (81%)	126/149 (84%)	+2
FPTEVCPM046_H03_PDNR-F	802	ref	XP_002309256.1	predicted protein	Populus trichocarpa	146	264 bits (675)	6e-69	127/149 (85%)	133/149 (89%)	+3
Contig1072	620	gb	ACJ02349.1	60S ribosomal protein L35a	Vernicia fordii	112	221 bits (563)	3e-56	103/112 (91%)	109/112 (97%)	+2
FPTEVCPM071_C04_PDNR-F	1140	ref	NP_001151620.1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit	Zea mays	623	406 bits (1044)	e-111	205/344 (59%)	262/344 (76%), Gaps = 5/344 (1%)	+2
Contig0151	940	ref	XP_002531594.1	40S ribosomal protein S5, putative	Ricinus communis	211	359 bits (922)	2e-97	180/211 (85%)	195/211 (92%)	+2
Contig0463	452	gb	ACG48499.1	40S ribosomal protein S5	Zea mays	199	126 bits (317)	7e-28	65/65 (100%)	65/65 (100%)	+1
FPTEVCPM033_A03_PDNR-F	798	ref	XP_002311621.1	predicted protein	Populus trichocarpa	133	197 bits (501)	1e-48	102/123 (82%)	107/123 (86%)	+2
Contig0663	1030	ref	NP_187967.1	60S ribosomal protein L7 (RPL7D)	Arabidopsis thaliana	244	369 bits (946)	e-100	183/244 (75%)	201/244 (82%)	+3
FPTEVCPM078_F10_PDNR-F	470	ref	XP_002447060.1	hypothetical protein SORBIDRAFT_06g027780	Sorghum bicolor	190	109 bits (272)	2e-31	47/56 (83%)	52/56 (92%)	+3
FPTEVCPM019_D05_pNDR-F	665	gb	AAY41426.1	putative L24 ribosomal protein	Ipomoea batatas	146	169 bits (428)	2e-40	86/106 (81%)	90/106 (84%)	+3
Contig1454	1013	ref	NP_001150133.1	60S ribosomal protein L24	Zea mays	161	211 bits (536)	1e-52	103/111 (92%)	106/111 (95%)	+1
FPTEVCPM030_B02_PDNR-F	1016	ref	NP_001150133.1	60S ribosomal protein L24	Zea mays	161	207 bits (527)	1e-51	102/111 (91%)	105/111 (94%)	+1