Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPEAECP	Contig0619	1199

Contig Map:

(ProjectName=FPEAECP SequenceName=Contig0619):
FPEAECP041_H07_PDNR-F:
PEAECP044_B10_PDNR-F:

Sequences View:[Contig0619](Contig Seguence)

1130 bases 
CCTTACGGCCGGGGGAAGAACTCGTGGTCTTCCGGAGCTAAAACCCTAGCAATGGCGGTTAGGTCACTTTCTTGTCTTAGGAAGCTCCTCCGGCATGATAATGGTTCTTTTCCTTTTAGTTTCCGATTAGGGTTCACCGAGAGCCGACGTTCTGTGACGTACATGCCCCGGCCCGGCGACGGTGCGCCGAGGGCAGTGACGTTGATTCCCGGTGACGGAATCGGTCCCCTGGTCACCGGAGCCGTGCAGCAGGTCATGGAGGCGATGCATGCGCCTGTGTTCTTCGAGACCTATGAGGTCCATGGAGACATGACATCAGTGCCGCAGGAGGTAATTGATTCGATCCGAAGGAATAAGGTTTGTCTCAAAGGGGGCCTGGCTACGCCAGTGGGTGGAGGTGTGAGCTCTCTGAATGTGCAGCTGAGGAAGGAGCTCGATCTCTACGCTTCCCTGGTCAACTGTTTCAATCTCCCTGGGTTGCCCACACGCCATGAGAACGTTGACATTGTTGTAATTAGAGAGAACACGGAAGGGGAGTACTCTGGGCTTGAGCATGAGGTCGTTCCTGGTGTGGTAGAGAGCTTGAAGGTGATGACAAAGTTTTGTTCAGAACGGATTGCAAAATATGCTTTCGAATATGCCTACCTCAACAATCGAAAGAAGGTTACTGCTGTGCATAAAGCCAACATTATGAAACTTGCAGATGGTCTTTTTTTAGAATCTTGCCGGGAGGTTGCAACAAAGTACCCTGGGATAAAATATAATGAGATTATTGTTGACAATTGCTGCATGCAACTTGTTTCGAAGCCTGAGCAGTTCGATGTCATGGTCACTCCAAATCTGTACGGAAATCTTGTGGCAAACACTGCTGCAGGTATTGCTGGTGGAACTGGTGTCATGCCTGGAGGCAATGTCGGGCAAGACCACCGCAGTTTTTGAACAAGTGCTTCCGCAGGCAATGTAGGTAATGAGAACAAGTGGAACAAAAGAGGCGAATCCCGTTGCTCTCCTCCTCTCATCTGCTATGATGTTGAGACATCTCCAGTTCCCATCATTTGCTGACCGCCTGAGAACTGCTGTAAGGGAGTGATTGCGCAGGTAATTCATGACCAAGAACCTCGGAGGGAGCA

Sequences View:[Contig0619](Singleton Sequence)

Contig0619 1130  bases 
CCTTACGGCCGGGGGAAGAACTCGTGGTCTTCCGGAGCTAAAACCCTAGCAATGGCGGTTAGGTCACTTTCTTGTCTTAGGAAGCTCCTCCGGCATGATAATGGTTCTTTTCCTTTTAGTTTCCGATTAGGGTTCACCGAGAGCCGACGTTCTGTGACGTACATGCCCCGGCCCGGCGACGGTGCGCCGAGGGCAGTGACGTTGATTCCCGGTGACGGAATCGGTCCCCTGGTCACCGGAGCCGTGCAGCAGGTCATGGAGGCGATGCATGCGCCTGTGTTCTTCGAGACCTATGAGGTCCATGGAGACATGACATCAGTGCCGCAGGAGGTAATTGATTCGATCCGAAGGAATAAGGTTTGTCTCAAAGGGGGCCTGGCTACGCCAGTGGGTGGAGGTGTGAGCTCTCTGAATGTGCAGCTGAGGAAGGAGCTCGATCTCTACGCTTCCCTGGTCAACTGTTTCAATCTCCCTGGGTTGCCCACACGCCATGAGAACGTTGACATTGTTGTAATTAGAGAGAACACGGAAGGGGAGTACTCTGGGCTTGAGCATGAGGTCGTTCCTGGTGTGGTAGAGAGCTTGAAGGTGATGACAAAGTTTTGTTCAGAACGGATTGCAAAATATGCTTTCGAATATGCCTACCTCAACAATCGAAAGAAGGTTACTGCTGTGCATAAAGCCAACATTATGAAACTTGCAGATGGTCTTTTTTTAGAATCTTGCCGGGAGGTTGCAACAAAGTACCCTGGGATAAAATATAATGAGATTATTGTTGACAATTGCTGCATGCAACTTGTTTCGAAGCCTGAGCAGTTCGATGTCATGGTCACTCCAAATCTGTACGGAAATCTTGTGGCAAACACTGCTGCAGGTATTGCTGGTGGAACTGGTGTCATGCCTGGAGGCAATGTCGGGCAAGACCACCGCAGTTTTTGAACAAGTGCTTCCGCAGGCAATGTAGGTAATGAGAACAAGTGGAACAAAAGAGGCGAATCCCGTTGCTCTCCTCCTCTCATCTGCTATGATGTTGAGACATCTCCAGTTCCCATCATTTGCTGACCGCCTGAGAACTGCTGTAAGGGAGTGATTGCGCAGGTAATTCATGACCAAGAACCTCGGAGGGAGCA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002528761.1	isocitrate dehydrogenase, putative	Ricinus communis	372	500 bits (1287)	e-139	264/355 (74%)	279/355 (78%)	+1

KEGG Pathway	GO
Contig0619[1 Pathway]	Contig0619[33 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Carbohydrate Metabolism	00020	Citrate cycle (TCA cycle)	[PATH:ath00020]	Contig0619	AT4G35260	FPEAECP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G35260	AT4G35260	mitochondrion	GO:0005739	mitochondria
AT4G35260	AT4G35260	mitochondrion	GO:0005739	mitochondria
AT4G35260	AT4G35260	isocitrate dehydrogenase (NAD+) activity	GO:0004449	other enzyme activity
AT4G35260	AT4G35260	isocitrate dehydrogenase (NAD+) activity	GO:0004449	other enzyme activity
AT4G35260	AT4G35260	zinc ion binding	GO:0008270	other binding
AT4G35260	AT4G35260	isocitrate metabolic process	GO:0006102	other cellular processes
AT4G35260	AT4G35260	isocitrate metabolic process	GO:0006102	other metabolic processes
AT4G35260	AT4G35260	metabolic process	GO:0008152	other metabolic processes
AT4G35260	AT4G35260	tricarboxylic acid cycle	GO:0006099	other cellular processes
AT4G35260	AT4G35260	tricarboxylic acid cycle	GO:0006099	other metabolic processes
AT4G35260	AT4G35260	tricarboxylic acid cycle	GO:0006099	electron transport or energy pathways
AT4G35260	AT4G35260	mitochondrion	GO:0005739	mitochondria
AT4G35260	AT4G35260	mitochondrion	GO:0005739	mitochondria
AT4G35260	AT4G35260	isocitrate dehydrogenase (NAD+) activity	GO:0004449	other enzyme activity
AT4G35260	AT4G35260	isocitrate dehydrogenase (NAD+) activity	GO:0004449	other enzyme activity
AT4G35260	AT4G35260	zinc ion binding	GO:0008270	other binding
AT4G35260	AT4G35260	isocitrate metabolic process	GO:0006102	other cellular processes
AT4G35260	AT4G35260	isocitrate metabolic process	GO:0006102	other metabolic processes
AT4G35260	AT4G35260	metabolic process	GO:0008152	other metabolic processes
AT4G35260	AT4G35260	tricarboxylic acid cycle	GO:0006099	other cellular processes
AT4G35260	AT4G35260	tricarboxylic acid cycle	GO:0006099	other metabolic processes
AT4G35260	AT4G35260	tricarboxylic acid cycle	GO:0006099	electron transport or energy pathways
AT4G35260	AT4G35260	mitochondrion	GO:0005739	mitochondria
AT4G35260	AT4G35260	mitochondrion	GO:0005739	mitochondria
AT4G35260	AT4G35260	isocitrate dehydrogenase (NAD+) activity	GO:0004449	other enzyme activity
AT4G35260	AT4G35260	isocitrate dehydrogenase (NAD+) activity	GO:0004449	other enzyme activity
AT4G35260	AT4G35260	zinc ion binding	GO:0008270	other binding
AT4G35260	AT4G35260	isocitrate metabolic process	GO:0006102	other cellular processes
AT4G35260	AT4G35260	isocitrate metabolic process	GO:0006102	other metabolic processes
AT4G35260	AT4G35260	metabolic process	GO:0008152	other metabolic processes
AT4G35260	AT4G35260	tricarboxylic acid cycle	GO:0006099	other cellular processes
AT4G35260	AT4G35260	tricarboxylic acid cycle	GO:0006099	other metabolic processes
AT4G35260	AT4G35260	tricarboxylic acid cycle	GO:0006099	electron transport or energy pathways

Gene Network Informations
Gene Network	Interact with..
Contig0619[interact with..]	Not found!