Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEVCP	Contig0648	1137

Contig Map:

(ProjectName=FEVCP SequenceName=Contig0648):
FEVCPM010_H07_PDNRF:
FEVCPM013_B03_PDNRF:

Sequences View:[Contig0648](Contig Seguence)

1137 bases 
GAAAAACAGGCCAAAGAAGCAAGCCAATTGACTGCAGTAACAACCCGAACAACAAATGTTCACGGTGATGAACTTATTGTCACAACGACTAGTCCGTATGAACAAGCTGCATTTGGATCCAAAACCGATTGGAGAGTGAGGGCTATTTCAGCCACAAATCTGTATCTGCGTGTCAATCATATTTATGTTAACTCGGATGACATCAAGGAAACTGGTTACACGTATATCATGCCTAAGAACATATTGAAGAAATTTATCTGCATAGCTGATCTTAGAACCCAAATTGCTGGATATCTGTACGGTCTAAGCCCCCAAGATAATCCACAAGTGAAGGAAATCCGTTGTATTGTAATGCCACCACAATGGGGAAGTCACCAGCATGACAACCTCCCATCTGCTCTTCCTGAACACGAGTTCTTAAACGATCTGGAGCCATTGGGATGGATGCATACCCAGCCAAATGAGCTTCCCCAGCTATCTCCTCAGGATGTTACATCCCACGCCCGGATTCTGGAGAACAACAAACAATGGGATGGTGAAAAATGCATCGTTCTTACCTGCAGCTTCACGCCAGGTTCCTGCTCCTTGACCGCCTACAAACTTACACCCACTGGTTATGAATGGGGGCGTTCAAATAAGGATACTGGAAGCAACCCACACGGCTACCTACCTACCCACTATGAGAAGGTACAGATGCTCCTCAGCGATCGTTTCTTGGGGTACTACATGGGTTCCAGACAATGGTCCCTGGAACTATAACTTCATGGGCGTGAAGCATACGGCGAGCATGAAGTATGGCGTCAAGCTCGGCGCGCCGCGAGATTATTACCATGAAGATCACAGGCCTACTCATTTCCTGGAGTTTAGTAATTTAGAAGGTGAAATTGCCGAATTGGAGAGGGAGGATAAGTTTTCTTAAGAGTCGAGGTTGAGGGAGTATTCTTCTTTTCTTCTGTTGAGGTGGCAGCCTTTAGAATGGAAGTATGTTGCATTAGTGTAAATAATGTGCTGATTTCGTCTACGAGCATGATGTTTTTGTTGCCGGCTTTGTTTATATAGAATTTGGATTATAAGACTATAAAGAATGTGACATTATGGTTATTGGGGTGGTCGTTCTTTTCTTGGGAAAAAAAAAAA

Sequences View:[Contig0648](Singleton Sequence)

Contig0648 1137  bases 
GAAAAACAGGCCAAAGAAGCAAGCCAATTGACTGCAGTAACAACCCGAACAACAAATGTTCACGGTGATGAACTTATTGTCACAACGACTAGTCCGTATGAACAAGCTGCATTTGGATCCAAAACCGATTGGAGAGTGAGGGCTATTTCAGCCACAAATCTGTATCTGCGTGTCAATCATATTTATGTTAACTCGGATGACATCAAGGAAACTGGTTACACGTATATCATGCCTAAGAACATATTGAAGAAATTTATCTGCATAGCTGATCTTAGAACCCAAATTGCTGGATATCTGTACGGTCTAAGCCCCCAAGATAATCCACAAGTGAAGGAAATCCGTTGTATTGTAATGCCACCACAATGGGGAAGTCACCAGCATGACAACCTCCCATCTGCTCTTCCTGAACACGAGTTCTTAAACGATCTGGAGCCATTGGGATGGATGCATACCCAGCCAAATGAGCTTCCCCAGCTATCTCCTCAGGATGTTACATCCCACGCCCGGATTCTGGAGAACAACAAACAATGGGATGGTGAAAAATGCATCGTTCTTACCTGCAGCTTCACGCCAGGTTCCTGCTCCTTGACCGCCTACAAACTTACACCCACTGGTTATGAATGGGGGCGTTCAAATAAGGATACTGGAAGCAACCCACACGGCTACCTACCTACCCACTATGAGAAGGTACAGATGCTCCTCAGCGATCGTTTCTTGGGGTACTACATGGGTTCCAGACAATGGTCCCTGGAACTATAACTTCATGGGCGTGAAGCATACGGCGAGCATGAAGTATGGCGTCAAGCTCGGCGCGCCGCGAGATTATTACCATGAAGATCACAGGCCTACTCATTTCCTGGAGTTTAGTAATTTAGAAGGTGAAATTGCCGAATTGGAGAGGGAGGATAAGTTTTCTTAAGAGTCGAGGTTGAGGGAGTATTCTTCTTTTCTTCTGTTGAGGTGGCAGCCTTTAGAATGGAAGTATGTTGCATTAGTGTAAATAATGTGCTGATTTCGTCTACGAGCATGATGTTTTTGTTGCCGGCTTTGTTTATATAGAATTTGGATTATAAGACTATAAAGAATGTGACATTATGGTTATTGGGGTGGTCGTTCTTTTCTTGGGAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002509397.1	predicted protein	Micromonas sp. RCC299	2336	439 bits (1129)	e-140	205/244 (84%)	223/244 (91%), Gaps = 1/244 (0%)	+1

KEGG Pathway	GO
Contig0648[1 Pathway]	Contig0648[4 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03040	Spliceosome	[PATH:ath03040]	Contig0648	AT1G80070	FEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G80070	AT1G80070	chloroplast	GO:0009507	chloroplast
AT1G80070	AT1G80070	membrane	GO:0016020	other membranes
AT1G80070	AT1G80070	"nuclear mRNA splicing, via spliceosome"	GO:0000398	other cellular processes
AT1G80070	AT1G80070	"nuclear mRNA splicing, via spliceosome"	GO:0000398	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig0648[interact with..]	FEVCPM028_E09_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FEVCPM028_E09_PDNR-F	567	emb	CAO46309.1	unnamed protein product	Vitis vinifera	386	213 bits (542)	7e-54	97/107 (90%)	100/107 (93%)	+1