Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEVCP	Contig0297	522

Contig Map:

(ProjectName=FEVCP SequenceName=Contig0297):
FEVCPS023_E09_PDNR-F:
FEVCPS025_H07_PDNR-F:

Sequences View:[Contig0297](Contig Seguence)

1251 bases 
GGCGTGTCACCGGCTTCCTAGTTACGCCCAAAACTATCTCCTTCGTGACCAAACCCTCGGAGAAAACTTGGAAGGCAACGTCAGGATCGCGGTCTGGAGAGCCCTAAAATTCCCTTCTTTCACCTCTTTCCCTTCTGAAAGCAATGCCTTCTCAGAAGGTAGAAACGGGACACCAAGATGTGGTACATGATGTCTCCATGGACTACTATGGCAAACGCATGGCCACAGCCTCCTCCGACACCACCATCAAGATCATCGGCATCAGCGGCTCTTCACACCAACACCTCGCAACGTTAAGCGGCCACCAGGGACCAGTCTGGCAAGTTTCTTGGGCTCACCCCAAGTTCGGGTCCATGCTCGCCTCTTGCAGCTACGACGGCCGCGTCATCATATGGAAGGAAGGCAGCAAACCTGATGAGTGGACTCAAGCTCACATTTTCACCGAGCACAAATCCTCTGTGAACTCTGTTGCTTGGGCACCTCACGAGCTCGGTCTGTGCCTCGCATGCGGTTCGTCCGATGGCAACATTTCGGTCTTCACGGCTCGAACGGATGGAGGTTGGGATACTGCTAGGATCGATCAAGCTCATCCGGTTGGCGTCACGTCGATCTCATGGGCTCCGACGTTGGCTCCCGGGGCGTTAGTTGGTTCGGCACCGCTCGATCCGGTTCAGAAACTCGCTTCGGGGGGATGCGACAATACAGTGAAGGTTTGGAAGCTTTATAATGGAAATTGGAAGATGGATTGTTTCCCGGCGCTTCAGATGCATGCGGACTGGGTGAGGGATGTGGCTTGGGCTCCGAATCTCGGGCTTCCGAAGTCGACGATCGCCAGTGCTTCTCAGGATGAGACGGTGGTGATATGGACGGTGGGGAAGGAAGGAGATCAATGGCAGGGGAGAGTTTTGTGGGACTTTAAGACGCCTGTTTGGAGGGTGAGTTGGTCGCTGACTGGGAATATACTGGCTGTGGCTGATGGTAATAATAGTGTGACTTTGTGGAAGGAAGCCGTGGATGGGGAGTGGCAGCAGGTGACGACCGTTGAGCCTTGAGGGATTTGAATTTTAGCTGTTCTGTCTTCTTTTGTCATGAGAAATCTCTGCTTTAAAGTTGTTGGAGAGCATAAATTTTAAAATTTGATTATGTTGTTTTCGATTTTATGTGTGTTTTATACTGCGCTTCCCGTTTCTATTTCTGGACTGCAATTGTCTAATTAATGGTGGATTTTTTAATGGGGAAAAAAAAAAAAAA522 bases 
GGCGGTGAGCGTGTGCCATTTTTGTTTACTGTAAAGCAGTTGGTGGCCACCGGAAAGCCGGAGAATTTTGGGGGGCAGTTTCTGGTGCCCAGCTATCGGGGATCGTCGTTTCTGGACCCAAAGGGAAGGGGAGGGTCCAGTGGGTATGACAACGCGGTGGCTTTGCCGGCAGGAGGAAGAGGGGATGAGGAGGAACTTACTAAGGAGAATATAAAGAGTACTGCTTCTAGTAGTGGGAAGATCAGTCTCACTGTGAACAAGAGCAAGCCGGAGACAGGGGAGGTTATTGGGGAGTTTGAGAGCTTGCAGCCATCTGACACAGATCTCGGTGCTAAGGCGCCCAAGGATGTTAAAATCAAGGGCATTTGGTATGCACAGCTTGAGTCTAATTAACTGCTAGCTTGTATATATGTATGTTGTTCTGTTAATGTTCCCTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTGTGAGTTTTTTGGCCTGAATTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig0297](Singleton Sequence)

Contig0297 1251  bases 
GGCGTGTCACCGGCTTCCTAGTTACGCCCAAAACTATCTCCTTCGTGACCAAACCCTCGGAGAAAACTTGGAAGGCAACGTCAGGATCGCGGTCTGGAGAGCCCTAAAATTCCCTTCTTTCACCTCTTTCCCTTCTGAAAGCAATGCCTTCTCAGAAGGTAGAAACGGGACACCAAGATGTGGTACATGATGTCTCCATGGACTACTATGGCAAACGCATGGCCACAGCCTCCTCCGACACCACCATCAAGATCATCGGCATCAGCGGCTCTTCACACCAACACCTCGCAACGTTAAGCGGCCACCAGGGACCAGTCTGGCAAGTTTCTTGGGCTCACCCCAAGTTCGGGTCCATGCTCGCCTCTTGCAGCTACGACGGCCGCGTCATCATATGGAAGGAAGGCAGCAAACCTGATGAGTGGACTCAAGCTCACATTTTCACCGAGCACAAATCCTCTGTGAACTCTGTTGCTTGGGCACCTCACGAGCTCGGTCTGTGCCTCGCATGCGGTTCGTCCGATGGCAACATTTCGGTCTTCACGGCTCGAACGGATGGAGGTTGGGATACTGCTAGGATCGATCAAGCTCATCCGGTTGGCGTCACGTCGATCTCATGGGCTCCGACGTTGGCTCCCGGGGCGTTAGTTGGTTCGGCACCGCTCGATCCGGTTCAGAAACTCGCTTCGGGGGGATGCGACAATACAGTGAAGGTTTGGAAGCTTTATAATGGAAATTGGAAGATGGATTGTTTCCCGGCGCTTCAGATGCATGCGGACTGGGTGAGGGATGTGGCTTGGGCTCCGAATCTCGGGCTTCCGAAGTCGACGATCGCCAGTGCTTCTCAGGATGAGACGGTGGTGATATGGACGGTGGGGAAGGAAGGAGATCAATGGCAGGGGAGAGTTTTGTGGGACTTTAAGACGCCTGTTTGGAGGGTGAGTTGGTCGCTGACTGGGAATATACTGGCTGTGGCTGATGGTAATAATAGTGTGACTTTGTGGAAGGAAGCCGTGGATGGGGAGTGGCAGCAGGTGACGACCGTTGAGCCTTGAGGGATTTGAATTTTAGCTGTTCTGTCTTCTTTTGTCATGAGAAATCTCTGCTTTAAAGTTGTTGGAGAGCATAAATTTTAAAATTTGATTATGTTGTTTTCGATTTTATGTGTGTTTTATACTGCGCTTCCCGTTTCTATTTCTGGACTGCAATTGTCTAATTAATGGTGGATTTTTTAATGGGGAAAAAAAAAAAAAAContig0297 522  bases 
GGCGGTGAGCGTGTGCCATTTTTGTTTACTGTAAAGCAGTTGGTGGCCACCGGAAAGCCGGAGAATTTTGGGGGGCAGTTTCTGGTGCCCAGCTATCGGGGATCGTCGTTTCTGGACCCAAAGGGAAGGGGAGGGTCCAGTGGGTATGACAACGCGGTGGCTTTGCCGGCAGGAGGAAGAGGGGATGAGGAGGAACTTACTAAGGAGAATATAAAGAGTACTGCTTCTAGTAGTGGGAAGATCAGTCTCACTGTGAACAAGAGCAAGCCGGAGACAGGGGAGGTTATTGGGGAGTTTGAGAGCTTGCAGCCATCTGACACAGATCTCGGTGCTAAGGCGCCCAAGGATGTTAAAATCAAGGGCATTTGGTATGCACAGCTTGAGTCTAATTAACTGCTAGCTTGTATATATGTATGTTGTTCTGTTAATGTTCCCTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTGTGAGTTTTTTGGCCTGAATTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
dbj	BAA96365.3	oxygen evolving enhancer protein 1 precursor	Bruguiera gymnorhiza	332	234 bits (597)	2e-60	113/129 (87%)	124/129 (96%)	+1

KEGG Pathway	GO
Contig0297[1 Pathway]	Contig0297[144 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Energy Metabolism	00195	Photosynthesis	[PATH:ath00195]	Contig0297	AT3G50820	FEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G50820	AT3G50820	chloroplast	GO:0009507	chloroplast
AT3G50820	AT3G50820	chloroplast	GO:0009507	chloroplast
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	plastid
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	plastid
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	chloroplast
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	chloroplast
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	other intracellular components
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	plastid
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	plastid
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other membranes
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other membranes
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other intracellular components
AT3G50820	AT3G50820	thylakoid lumen	GO:0031977	other intracellular components
AT3G50820	AT3G50820	oxygen evolving complex	GO:0009654	other membranes
AT3G50820	AT3G50820	oxygen evolving complex	GO:0009654	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	plastid
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	plastid
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	plastid
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other membranes
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other intracellular components
AT3G50820	AT3G50820	poly(U) RNA binding	GO:0008266	DNA or RNA binding
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	plastid
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	chloroplast
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	other membranes
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	other intracellular components
AT3G50820	AT3G50820	"photosynthesis, light reaction"	GO:0019684	other cellular processes
AT3G50820	AT3G50820	chloroplast	GO:0009507	chloroplast
AT3G50820	AT3G50820	chloroplast	GO:0009507	chloroplast
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	plastid
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	plastid
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	chloroplast
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	chloroplast
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	other intracellular components
AT3G50820	AT3G50820	chloroplast stroma	GO:0009570	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	plastid
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	plastid
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other membranes
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other membranes
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other intracellular components
AT3G50820	AT3G50820	thylakoid lumen	GO:0031977	other intracellular components
AT3G50820	AT3G50820	oxygen evolving complex	GO:0009654	other membranes
AT3G50820	AT3G50820	oxygen evolving complex	GO:0009654	other intracellular components
AT3G50820	AT3G50820	thylakoid	GO:0009579	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	plastid
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	plastid
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid lumen	GO:0009543	other intracellular components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	plastid
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	chloroplast
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other membranes
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast thylakoid membrane	GO:0009535	other intracellular components
AT3G50820	AT3G50820	poly(U) RNA binding	GO:0008266	DNA or RNA binding
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	plastid
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	chloroplast
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	other membranes
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	other cytoplasmic components
AT3G50820	AT3G50820	chloroplast photosystem II	GO:0030095	other intracellular components
AT3G50820	AT3G50820	"photosynthesis, light reaction"	GO:0019684	other cellular processes
AT3G50820	AT3G50820	"photosynthesis, light reaction"	GO:0019684	other metabolic processes
AT3G50820	AT3G50820	"photosynthesis, light reaction"	GO:0019684	electron transport or energy pathways
AT3G50820	AT3G50820	photoinhibition	GO:0010205	other cellular processes
AT3G50820	AT3G50820	photoinhibition	GO:0010205	other metabolic processes
AT3G50820	AT3G50820	photoinhibition	GO:0010205	electron transport or energy pathways
AT3G50820	AT3G50820	photoinhibition	GO:0010205	response to abiotic or biotic stimulus
AT3G50820	AT3G50820	photosystem II assembly	GO:0010207	other cellular processes
AT3G50820	AT3G50820	photosystem II assembly	GO:0010207	other metabolic processes
AT3G50820	AT3G50820	photosystem II assembly	GO:0010207	electron transport or energy pathways
AT3G50820	AT3G50820	photosystem II stabilization	GO:0042549	other cellular processes
AT3G50820	AT3G50820	photosystem II stabilization	GO:0042549	other metabolic processes
AT3G50820	AT3G50820	photosystem II stabilization	GO:0042549	electron transport or energy pathways
AT3G50820	AT3G50820	regulation of protein dephosphorylation	GO:0035304	protein metabolism
AT3G50820	AT3G50820	regulation of protein dephosphorylation	GO:0035304	other cellular processes
AT3G50820	AT3G50820	regulation of protein dephosphorylation	GO:0035304	other metabolic processes
AT3G50820	AT3G50820	oxygen evolving activity	GO:0010242	other enzyme activity
AT3G50820	AT3G50820	plastoglobule	GO:0010287	plastid
AT3G50820	AT3G50820	plastoglobule	GO:0010287	plastid
AT3G50820	AT3G50820	plastoglobule	GO:0010287	chloroplast
AT3G50820	AT3G50820	plastoglobule	GO:0010287	chloroplast
AT3G50820	AT3G50820	plastoglobule	GO:0010287	other cytoplasmic components
AT3G50820	AT3G50820	plastoglobule	GO:0010287	other intracellular components
AT3G50820	AT3G50820	plastoglobule	GO:0010287	other cytoplasmic components
AT3G50820	AT3G50820	plastoglobule	GO:0010287	other intracellular components
AT3G50820	AT3G50820	"photosynthesis, light reaction"	GO:0019684	other metabolic processes
AT3G50820	AT3G50820	"photosynthesis, light reaction"	GO:0019684	electron transport or energy pathways
AT3G50820	AT3G50820	photoinhibition	GO:0010205	other cellular processes
AT3G50820	AT3G50820	photoinhibition	GO:0010205	other metabolic processes
AT3G50820	AT3G50820	photoinhibition	GO:0010205	electron transport or energy pathways
AT3G50820	AT3G50820	photoinhibition	GO:0010205	response to abiotic or biotic stimulus
AT3G50820	AT3G50820	photosystem II assembly	GO:0010207	other cellular processes
AT3G50820	AT3G50820	photosystem II assembly	GO:0010207	other metabolic processes
AT3G50820	AT3G50820	photosystem II assembly	GO:0010207	electron transport or energy pathways
AT3G50820	AT3G50820	photosystem II stabilization	GO:0042549	other cellular processes
AT3G50820	AT3G50820	photosystem II stabilization	GO:0042549	other metabolic processes
AT3G50820	AT3G50820	photosystem II stabilization	GO:0042549	electron transport or energy pathways
AT3G50820	AT3G50820	regulation of protein dephosphorylation	GO:0035304	protein metabolism
AT3G50820	AT3G50820	regulation of protein dephosphorylation	GO:0035304	other cellular processes
AT3G50820	AT3G50820	regulation of protein dephosphorylation	GO:0035304	other metabolic processes
AT3G50820	AT3G50820	oxygen evolving activity	GO:0010242	other enzyme activity
AT3G50820	AT3G50820	plastoglobule	GO:0010287	plastid
AT3G50820	AT3G50820	plastoglobule	GO:0010287	plastid
AT3G50820	AT3G50820	plastoglobule	GO:0010287	chloroplast
AT3G50820	AT3G50820	plastoglobule	GO:0010287	chloroplast
AT3G50820	AT3G50820	plastoglobule	GO:0010287	other cytoplasmic components
AT3G50820	AT3G50820	plastoglobule	GO:0010287	other intracellular components
AT3G50820	AT3G50820	plastoglobule	GO:0010287	other cytoplasmic components
AT3G50820	AT3G50820	plastoglobule	GO:0010287	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig0297[interact with..]	Not found!