Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig3402	1128

Contig Map:

(ProjectName=FEICP SequenceName=Contig3402):
EICPM050-H09_pDNR-R:
EICPM050_H09_pDNR-F:

Sequences View:[Contig3402](Contig Seguence)

1128 bases 
GGCTGGCTGCCATTTTGCGGTTCACTGTAGAAGAAAAGAAGCTCGCGAGCCAGCAGAGGGAGAGAGAGGGCGACAATGTCATCTCTTGGGCCAATCAACCATCTGCTCCCCTCAACTTCATCAGCGAAAAGGACCCAAAAATTATCCCAATTTCTCCCTGAAACCTTTCCCAAAGCCCTTGTAGCTATTCGGTCTCTTTCCCTTCACGCTCCTCCTGCTGACTTTGTCCGGAGGAGAAATCTTCGGTCTACGAATGTGGTCGCCGCCGCCAATCGGCACCTTATGGGATCAGTGACGAACGCTAAAGGACTCCGCTTTGCTGTGGTTGTAGCACGGTTTAATGAGATCATCACAAATCCATTATTGGAAGGAGCTCTACAGACTTTTAAACAATATTCAGTCAAAGAAGAAGACATTACAGTCGTCAAAGTTCCAGGTAGTTTTGAGATTCCTGTTGTTGCACAAAAACTTGGAAAATCGGGAGCTTATGATGCAATTTTATGCATAGGAGCTGTGATAAGAGGTGATACCACTCATTATGATGCTGTTGCAAATTCAGCAGCATCTGGTGTGCTCAATGCTGGGTTGAGTTCAGGAGTTCCTTGTATTTTCGGTGTTCTTACCTGTGATAGCATGGAACAGGCCATTAACCGTGCTGGAGGCAAATCTGGAAATAAGGGTTCAGAGGCTGCCTTAACTGCAATTGAGATGGCATCACTTTTTGAGCACCACCTGAAGAAATAAAATGCATAAAATTTGGCATCTCAACCTTATTTTTATAAAGACTATTTATTCAACAATTGCAAGGTTTTCTACTCTATTGCATCTTCGCTCTTTGTAGCAAGCAGAGTTTTGTAGCTTTGGTTCTCTCAAGTTCTATGCTTAATTCAAATTATCAATTTTCATGAAGAAAGGTTCATTGTGAGTGTTCTTGAATTTAGAACTTGTCTCCATATCGATTCTAAATCGACGAGTATAGATTTCTTCCTGTTTCTTGCTATGATGTTGGCTGATTCCAAGTGTTTTTGAATACAGAAGTCCATTTAATACCTAGAATTGTGGAAAAGTTTTGAAACAATATTATTGTTCTTATAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig3402](Singleton Sequence)

Contig3402 1128  bases 
GGCTGGCTGCCATTTTGCGGTTCACTGTAGAAGAAAAGAAGCTCGCGAGCCAGCAGAGGGAGAGAGAGGGCGACAATGTCATCTCTTGGGCCAATCAACCATCTGCTCCCCTCAACTTCATCAGCGAAAAGGACCCAAAAATTATCCCAATTTCTCCCTGAAACCTTTCCCAAAGCCCTTGTAGCTATTCGGTCTCTTTCCCTTCACGCTCCTCCTGCTGACTTTGTCCGGAGGAGAAATCTTCGGTCTACGAATGTGGTCGCCGCCGCCAATCGGCACCTTATGGGATCAGTGACGAACGCTAAAGGACTCCGCTTTGCTGTGGTTGTAGCACGGTTTAATGAGATCATCACAAATCCATTATTGGAAGGAGCTCTACAGACTTTTAAACAATATTCAGTCAAAGAAGAAGACATTACAGTCGTCAAAGTTCCAGGTAGTTTTGAGATTCCTGTTGTTGCACAAAAACTTGGAAAATCGGGAGCTTATGATGCAATTTTATGCATAGGAGCTGTGATAAGAGGTGATACCACTCATTATGATGCTGTTGCAAATTCAGCAGCATCTGGTGTGCTCAATGCTGGGTTGAGTTCAGGAGTTCCTTGTATTTTCGGTGTTCTTACCTGTGATAGCATGGAACAGGCCATTAACCGTGCTGGAGGCAAATCTGGAAATAAGGGTTCAGAGGCTGCCTTAACTGCAATTGAGATGGCATCACTTTTTGAGCACCACCTGAAGAAATAAAATGCATAAAATTTGGCATCTCAACCTTATTTTTATAAAGACTATTTATTCAACAATTGCAAGGTTTTCTACTCTATTGCATCTTCGCTCTTTGTAGCAAGCAGAGTTTTGTAGCTTTGGTTCTCTCAAGTTCTATGCTTAATTCAAATTATCAATTTTCATGAAGAAAGGTTCATTGTGAGTGTTCTTGAATTTAGAACTTGTCTCCATATCGATTCTAAATCGACGAGTATAGATTTCTTCCTGTTTCTTGCTATGATGTTGGCTGATTCCAAGTGTTTTTGAATACAGAAGTCCATTTAATACCTAGAATTGTGGAAAAGTTTTGAAACAATATTATTGTTCTTATAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002331646.1	predicted protein	Populus trichocarpa	221	266 bits (681)	2e-69	135/168 (80%)	150/168 (89%)	+1

KEGG Pathway	GO
Contig3402[1 Pathway]	Contig3402[26 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Metabo lism of Cofactors and Vitamins	00740	Riboflavin metabolism	[PATH:ath00740]	Contig3402	AT2G44050	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G44050	AT2G44050	chloroplast	GO:0009507	chloroplast
AT2G44050	AT2G44050	chloroplast	GO:0009507	chloroplast
AT2G44050	AT2G44050	chloroplast stroma	GO:0009570	plastid
AT2G44050	AT2G44050	chloroplast stroma	GO:0009570	chloroplast
AT2G44050	AT2G44050	chloroplast stroma	GO:0009570	other cytoplasmic components
AT2G44050	AT2G44050	chloroplast stroma	GO:0009570	other intracellular components
AT2G44050	AT2G44050	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT2G44050	AT2G44050	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT2G44050	AT2G44050	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT2G44050	AT2G44050	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT2G44050	AT2G44050	jasmonic acid mediated signaling pathway	GO:0009867	other biological processes
AT2G44050	AT2G44050	"6,7-dimethyl-8-ribityllumazine synthase activity"	GO:0000906	other enzyme activity
AT2G44050	AT2G44050	"6,7-dimethyl-8-ribityllumazine synthase activity"	GO:0000906	other enzyme activity
AT2G44050	AT2G44050	chloroplast	GO:0009507	chloroplast
AT2G44050	AT2G44050	chloroplast	GO:0009507	chloroplast
AT2G44050	AT2G44050	chloroplast stroma	GO:0009570	plastid
AT2G44050	AT2G44050	chloroplast stroma	GO:0009570	chloroplast
AT2G44050	AT2G44050	chloroplast stroma	GO:0009570	other cytoplasmic components
AT2G44050	AT2G44050	chloroplast stroma	GO:0009570	other intracellular components
AT2G44050	AT2G44050	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT2G44050	AT2G44050	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT2G44050	AT2G44050	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT2G44050	AT2G44050	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT2G44050	AT2G44050	jasmonic acid mediated signaling pathway	GO:0009867	other biological processes
AT2G44050	AT2G44050	"6,7-dimethyl-8-ribityllumazine synthase activity"	GO:0000906	other enzyme activity
AT2G44050	AT2G44050	"6,7-dimethyl-8-ribityllumazine synthase activity"	GO:0000906	other enzyme activity

Gene Network Informations
Gene Network	Interact with..
Contig3402[interact with..]	Not found!