Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	FCTEVCPM103_E02_PDNR-F	1132

Contig Map:

(ProjectName=FCTEVCP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FCTEVCPM103_E02_PDNR-F](Singleton Sequence)

FCTEVCPM103_E02_PDNR-F 1132  bases 
GGAGCTGGAACCCTAACCCAAAGTTCAGGCATGTGTTGATTTTTAATCGGCTTCTCGCGAAACCATCTCTCTCCATTTCTTCCCTGCAAAAAATCGGAAACTAGGGATTGCGATGGCATTAACTGGGCGTATCAGATCCGGACTTCCCTTCTTCCGTTACCTCCTGAGGTCGGAAGCCACCCTCTCCCGGCGATCGATTGCCGATAGAAGCTTCCCAGGCCCCAATCTTGCAGGTTCCGAGGGCTTGAGGTGCTTTGCGACCAAAACGAAGGAGACTGAAGCAAATATTAAGATCCCTCTGTCTCTCTTTGGGGGTACTGGAAACTATGCATCTGCTCTATTCCTCGCTGCTGCCAACGCCAACCAGTTAGACAAGGTTGAATCGGAGATACTCGATGTCGTCGAAGCTTCCAAGAGGAGCCCTCTGTTCTCGAGTTTCATTAAGGATCTATCAATACCGAGGGAGACCAGAGTAAAAGCTGTGTCCGAAATTTTTTCGGAGGCTGGTTTTACAGATGTCTGCAAGAATTTCTTGATTGTCTTAGCTGAGAACGGGAGGCTAAAGTATTTAGAGCGCATTGCTCAGAGATTTGTTGATTTGACTATGGCACACAGAGGAGAAGTTAAAGTCATTGTGACTTCAGTGATTCCACTTCCTGAGCAAGAGGAAAAAGAGCTGAAGCAAACACTGCAAGACATCCTCGGAGCGGGCAAGACTGTTAAACTGGAGCAGAAGATTGATCCCAGAATTCTGGGAGGACTGGTGATTGAGTTCGATCAGAAGGTCTTCGATATGTCGATAAAGACGAGGGCGAAGCAGATGGAAGAGTTCTTGAGACAGCCCCTCCATTTCGGCTAAAATTGCAGAACAACCTGGAGCTGAATTTGCAGCCCAGCTGCCCCTTCTCTGCTCCTTGACATGCTGCTTTGCATAATCTACTTTCCCTTGTAAGTCCAGACTAGGAAATAATTTCATACAGACCCTCTCTATTTCTGCCTATGATGCTTTGAGCTCCAAATGCTGCTGTCTCCTAAAAAATTTTCTTTTTTATTGCATCCTATGTGACCATACTTATTTGGAGCCTTTTGAATCATGACCATTAGCCTACAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
dbj	BAF20113.2	Os06g0646500	Oryza sativa Japonica Group	271	245 bits (626)	5e-63	143/253 (56%)	172/253 (67%), Gaps = 1/253 (0%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[52 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Energy Metabolism	00190	Oxidative phosphorylation	[PATH:ath00190]	FCTEVCPM103_E02_PDNR-F	AT5G13450	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G13450	AT5G13450	chloroplast	GO:0009507	chloroplast
AT5G13450	AT5G13450	membrane	GO:0016020	other membranes
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	plasma membrane	GO:0005886	plasma membrane
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	transport
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	other cellular processes
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	other metabolic processes
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	electron transport or energy pathways
AT5G13450	AT5G13450	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	mitochondria
AT5G13450	AT5G13450	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other membranes
AT5G13450	AT5G13450	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other cytoplasmic components
AT5G13450	AT5G13450	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other intracellular components
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	zinc ion binding	GO:0008270	other binding
AT5G13450	AT5G13450	"hydrogen ion transporting ATP synthase activity, rotational mechanism"	GO:0046933	transporter activity
AT5G13450	AT5G13450	cobalt ion binding	GO:0050897	other binding
AT5G13450	AT5G13450	chloroplast	GO:0009507	chloroplast
AT5G13450	AT5G13450	membrane	GO:0016020	other membranes
AT5G13450	AT5G13450	plasma membrane	GO:0005886	plasma membrane
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	transport
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	other cellular processes
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	other metabolic processes
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	electron transport or energy pathways
AT5G13450	AT5G13450	chloroplast	GO:0009507	chloroplast
AT5G13450	AT5G13450	membrane	GO:0016020	other membranes
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	plasma membrane	GO:0005886	plasma membrane
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	transport
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	other cellular processes
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	other metabolic processes
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	electron transport or energy pathways
AT5G13450	AT5G13450	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	mitochondria
AT5G13450	AT5G13450	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other membranes
AT5G13450	AT5G13450	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other cytoplasmic components
AT5G13450	AT5G13450	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	GO:0000275	other intracellular components
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	mitochondrion	GO:0005739	mitochondria
AT5G13450	AT5G13450	zinc ion binding	GO:0008270	other binding
AT5G13450	AT5G13450	"hydrogen ion transporting ATP synthase activity, rotational mechanism"	GO:0046933	transporter activity
AT5G13450	AT5G13450	cobalt ion binding	GO:0050897	other binding
AT5G13450	AT5G13450	chloroplast	GO:0009507	chloroplast
AT5G13450	AT5G13450	membrane	GO:0016020	other membranes
AT5G13450	AT5G13450	plasma membrane	GO:0005886	plasma membrane
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	transport
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	other cellular processes
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	other metabolic processes
AT5G13450	AT5G13450	ATP synthesis coupled proton transport	GO:0015986	electron transport or energy pathways

Gene Network Informations
Gene Network	Interact with..
FCTEVCPM103_E02_PDNR-F[interact with..]	FCTEVCPM059_E12_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FCTEVCPM059_E12_PDNR-F	812	gb	ACF06624.1	40S ribosomal protein S11	Elaeis guineensis	159	289 bits (739)	2e-76	138/145 (95%)	141/145 (97%)	+1