Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	Contig1389	995

Contig Map:

(ProjectName=FCTEVCP SequenceName=Contig1389):
FCTEVCPM101_H04_PDNR-F:
FCTEVCPM067_E01_PDNR-F:

Sequences View:[Contig1389](Contig Seguence)

995 bases 
GGAAAATCTCGAAAGAGGAAATACCCGCAGTCGGCGGGTCTGGTTTCTTCCGGCCCGCCTTTGACGACTAGCTGTCCGTAACGAGACACCGCAGAGGCCTGTGATGGCAGAAGCGGAGCAACAGGAGAAGATTCTGGGTCTGACCGAGCAATGGTTACTCGTTGATAAAGATGAGCTGGACGATCATAGCGATACTTCCAAACAAGGAACTGAGGAAATTGATGCAAAGAAAATTGATCAAGCCCCAGTTTCAGTGGAGATTGCTCCTACTGCAAGGGAGAAAGGTGCAAACCCTAACCCAGAGGGAGAAATAACAACAGTGGAGGAAAAACAAGAAGTGAAGGAAAATTCCCCTATCACAAAGGAAAACAGCGTTGCCGCTGAACAAAACACACAACCATCAGAGGAAGTAGAAGAAAAGCATGAACCTGTGGAGACTACCTCTACTGCAGTGGAGAATAATGAAAACCCTAGCTCAGAGACAGAGCAAGTGCAAGAAGAAGAAAACGAAGAGGCCAAAGAAGAAACTCCATTGATCAAGCTTGAGACTGCCCCAGCTGATTTCCGCTTCCCAACCACAAACCAAACGAGGCATTGCTTTACCCGCTACATCGAGTTTCATAGGTGCATAAATGCTAAAGGTGAAGGAGCACCGGAGTGTGAAAAATTTGCAAAATATTACAGATCCCTATGCCCTGGTGAATGGATTGAACGATGGAATGAACAGAGGGAGAATGGTACCTTTCCCGGCCCTCTGTAGAATCTGCTAATCATATGTGTGCCATGCAACTCCTGCTGCTGTGGGTGGGATAAATAGCAGTTTCTGTGAGAGATGACGCATCGCAAGGACGGGTATTTATTTTCCGAGTAATTTTTTGTTCGAATAAAAAAAAATTTTGTTCGGTTCAAACGAAATGACTTGACACATTCTCATCCTACTCCCCGCTAATCCACAAAATTTGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig1389](Singleton Sequence)

Contig1389 995  bases 
GGAAAATCTCGAAAGAGGAAATACCCGCAGTCGGCGGGTCTGGTTTCTTCCGGCCCGCCTTTGACGACTAGCTGTCCGTAACGAGACACCGCAGAGGCCTGTGATGGCAGAAGCGGAGCAACAGGAGAAGATTCTGGGTCTGACCGAGCAATGGTTACTCGTTGATAAAGATGAGCTGGACGATCATAGCGATACTTCCAAACAAGGAACTGAGGAAATTGATGCAAAGAAAATTGATCAAGCCCCAGTTTCAGTGGAGATTGCTCCTACTGCAAGGGAGAAAGGTGCAAACCCTAACCCAGAGGGAGAAATAACAACAGTGGAGGAAAAACAAGAAGTGAAGGAAAATTCCCCTATCACAAAGGAAAACAGCGTTGCCGCTGAACAAAACACACAACCATCAGAGGAAGTAGAAGAAAAGCATGAACCTGTGGAGACTACCTCTACTGCAGTGGAGAATAATGAAAACCCTAGCTCAGAGACAGAGCAAGTGCAAGAAGAAGAAAACGAAGAGGCCAAAGAAGAAACTCCATTGATCAAGCTTGAGACTGCCCCAGCTGATTTCCGCTTCCCAACCACAAACCAAACGAGGCATTGCTTTACCCGCTACATCGAGTTTCATAGGTGCATAAATGCTAAAGGTGAAGGAGCACCGGAGTGTGAAAAATTTGCAAAATATTACAGATCCCTATGCCCTGGTGAATGGATTGAACGATGGAATGAACAGAGGGAGAATGGTACCTTTCCCGGCCCTCTGTAGAATCTGCTAATCATATGTGTGCCATGCAACTCCTGCTGCTGTGGGTGGGATAAATAGCAGTTTCTGTGAGAGATGACGCATCGCAAGGACGGGTATTTATTTTCCGAGTAATTTTTTGTTCGAATAAAAAAAAATTTTGTTCGGTTCAAACGAAATGACTTGACACATTCTCATCCTACTCCCCGCTAATCCACAAAATTTGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002513958.1	cytochrome C oxidase polypeptide vib, putative	Ricinus communis	191	172 bits (437)	4e-41	97/206 (47%)	118/206 (57%)	+2

KEGG Pathway	GO
Contig1389[1 Pathway]	Contig1389[30 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Energy Metabolism	00190	Oxidative phosphorylation	[PATH:ath00190]	Contig1389	AT1G22450	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G22450	AT1G22450	chloroplast	GO:0009507	chloroplast
AT1G22450	AT1G22450	thylakoid	GO:0009579	other intracellular components
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	plastid
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	chloroplast
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	other membranes
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	other cytoplasmic components
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	other intracellular components
AT1G22450	AT1G22450	response to salt stress	GO:0009651	response to stress
AT1G22450	AT1G22450	response to salt stress	GO:0009651	response to abiotic or biotic stimulus
AT1G22450	AT1G22450	mitochondrion	GO:0005739	mitochondria
AT1G22450	AT1G22450	mitochondrion	GO:0005739	mitochondria
AT1G22450	AT1G22450	copper ion binding	GO:0005507	other binding
AT1G22450	AT1G22450	cytochrome-c oxidase activity	GO:0004129	transporter activity
AT1G22450	AT1G22450	cytochrome-c oxidase activity	GO:0004129	other enzyme activity
AT1G22450	AT1G22450	oxidation-reduction process	GO:0055114	other metabolic processes
AT1G22450	AT1G22450	chloroplast	GO:0009507	chloroplast
AT1G22450	AT1G22450	thylakoid	GO:0009579	other intracellular components
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	plastid
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	chloroplast
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	other membranes
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	other cytoplasmic components
AT1G22450	AT1G22450	chloroplast thylakoid membrane	GO:0009535	other intracellular components
AT1G22450	AT1G22450	response to salt stress	GO:0009651	response to stress
AT1G22450	AT1G22450	response to salt stress	GO:0009651	response to abiotic or biotic stimulus
AT1G22450	AT1G22450	mitochondrion	GO:0005739	mitochondria
AT1G22450	AT1G22450	mitochondrion	GO:0005739	mitochondria
AT1G22450	AT1G22450	copper ion binding	GO:0005507	other binding
AT1G22450	AT1G22450	cytochrome-c oxidase activity	GO:0004129	transporter activity
AT1G22450	AT1G22450	cytochrome-c oxidase activity	GO:0004129	other enzyme activity
AT1G22450	AT1G22450	oxidation-reduction process	GO:0055114	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig1389[interact with..]	Not found!