Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	Contig0619	1019

Contig Map:

(ProjectName=FCTEVCP SequenceName=Contig0619):
FCTEVCPM110_H11_PDNR-F:
FCTEVCPM117_D10_PDNR-F:
FCTEVCPM117_G04_PDNR-F:
FCTEVCPM110_A08_PDNR-F:

Sequences View:[Contig0619](Contig Seguence)

1019 bases 
GAAAAACGCGAACACCGGAACGGAGGGATCTGAAAACGGCGATTATCGCCGTTCCGGTTGTCGCGCTTCTTCAGAAGTTCGTCGGCTAAACGAGCTCCCGGCCTTCTCCCTGCGTTCTCCGAGACTGAAAGGAGACGAGCCGCGCTCTCAAACTTAGCTTCAATCCTTCGCCTCCCTTGGATTGTGAGAAAGGGAGGAACGCCATTGAAGAGGCTGCATTCCGAATGGCTAATGTTACCTCTTCTTATATACAGGGTACAACTTTTACCAGGCGGTATTACTGCTTGAAAGAATTTAAAGGATTGAGGTTCTCATCTCTCCCGCTGTTTGCTGGAAAGCTTCGAACTACACACCAACCACCATCAGGAGTGGTCCTGTTTCTGCCTTGTTTGGAGACAACCGTGTCAAGAATAGGAAAGATGGCATTCCATCTTATTCTAAGCATGCAATAAATGACCAGGATATTGTGTCAACAAAAGAAGTAGCAAGTAATGGTACTGCTATAACTGATGGGTTTTTTGACCACCAAGTTGAACAAGATTTAGACTGTCCCACTAAAGGATTTTCTTCGGTCTCAGAAGCTATTGAGGATATCCGTCAAGGCAAGCTTGTAATTGTGGTTGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGGCAGCTTCTAAGGCTACACCAGAAGCTATGGCTTTTATTGTAAGGCATGGGACTGGAATTGTGTGTGTCGGCATGAAAGGAGAAGACCTCGAGAGGCTACAACTTCCACAAATGGTCATTAACAGAGATAATGAGGAGAAACTTCGGACAGCATTCACTGTTTCGGTGGATGCCAAAGAGGGCACAACCACTGGTGTTTCTGCCAAAGATAGAGCAACAACCATTTTGGCTCTTGCATCTCCTCACTCCAAGTCTGAAGACTTTAACCGTCCTGGCCAATATTTTTCCGTTGAAGTATAGGGAGGGTGGTGTGCTTAAAGAGCTGGGCCACACAGAAGCCTTCTGTTGATCTGCTATA

Sequences View:[Contig0619](Singleton Sequence)

Contig0619 1019  bases 
GAAAAACGCGAACACCGGAACGGAGGGATCTGAAAACGGCGATTATCGCCGTTCCGGTTGTCGCGCTTCTTCAGAAGTTCGTCGGCTAAACGAGCTCCCGGCCTTCTCCCTGCGTTCTCCGAGACTGAAAGGAGACGAGCCGCGCTCTCAAACTTAGCTTCAATCCTTCGCCTCCCTTGGATTGTGAGAAAGGGAGGAACGCCATTGAAGAGGCTGCATTCCGAATGGCTAATGTTACCTCTTCTTATATACAGGGTACAACTTTTACCAGGCGGTATTACTGCTTGAAAGAATTTAAAGGATTGAGGTTCTCATCTCTCCCGCTGTTTGCTGGAAAGCTTCGAACTACACACCAACCACCATCAGGAGTGGTCCTGTTTCTGCCTTGTTTGGAGACAACCGTGTCAAGAATAGGAAAGATGGCATTCCATCTTATTCTAAGCATGCAATAAATGACCAGGATATTGTGTCAACAAAAGAAGTAGCAAGTAATGGTACTGCTATAACTGATGGGTTTTTTGACCACCAAGTTGAACAAGATTTAGACTGTCCCACTAAAGGATTTTCTTCGGTCTCAGAAGCTATTGAGGATATCCGTCAAGGCAAGCTTGTAATTGTGGTTGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGGCAGCTTCTAAGGCTACACCAGAAGCTATGGCTTTTATTGTAAGGCATGGGACTGGAATTGTGTGTGTCGGCATGAAAGGAGAAGACCTCGAGAGGCTACAACTTCCACAAATGGTCATTAACAGAGATAATGAGGAGAAACTTCGGACAGCATTCACTGTTTCGGTGGATGCCAAAGAGGGCACAACCACTGGTGTTTCTGCCAAAGATAGAGCAACAACCATTTTGGCTCTTGCATCTCCTCACTCCAAGTCTGAAGACTTTAACCGTCCTGGCCAATATTTTTCCGTTGAAGTATAGGGAGGGTGGTGTGCTTAAAGAGCTGGGCCACACAGAAGCCTTCTGTTGATCTGCTATA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
dbj	BAD09287.1	putative riboflavin biosynthesis protein ribA	Oryza sativa Japonica Group	538	241 bits (616)	7e-62	133/208 (63%)	153/208 (73%)	+2

KEGG Pathway	GO
Contig0619[1 Pathway]	Contig0619[26 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Metabo lism of Cofactors and Vitamins	00740	Riboflavin metabolism	[PATH:ath00740]	Contig0619	AT5G64300	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G64300	AT5G64300	chloroplast	GO:0009507	chloroplast
AT5G64300	AT5G64300	membrane	GO:0016020	other membranes
AT5G64300	AT5G64300	"3,4-dihydroxy-2-butanone-4-phosphate synthase activity"	GO:0008686	other enzyme activity
AT5G64300	AT5G64300	"3,4-dihydroxy-2-butanone-4-phosphate synthase activity"	GO:0008686	other enzyme activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	chloroplast	GO:0009507	chloroplast
AT5G64300	AT5G64300	membrane	GO:0016020	other membranes
AT5G64300	AT5G64300	"3,4-dihydroxy-2-butanone-4-phosphate synthase activity"	GO:0008686	other enzyme activity
AT5G64300	AT5G64300	"3,4-dihydroxy-2-butanone-4-phosphate synthase activity"	GO:0008686	other enzyme activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	GTP cyclohydrolase II activity	GO:0003935	hydrolase activity
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other cellular processes
AT5G64300	AT5G64300	riboflavin biosynthetic process	GO:0009231	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig0619[interact with..]	Not found!