Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	Contig0329	1040

Contig Map:

(ProjectName=FCTEVCP SequenceName=Contig0329):
FCTEVCPM087_B04_PDNR-F:
FCTEVCPM047_C10_PDNR-F:
FCTEVCPM046_H04_PDNR-F:

Sequences View:[Contig0329](Contig Seguence)

1040 bases 
AAGCAGTGGTATCAACGCAGAGTGGCTATTACGGCCGGGGGACCTTCTTCCCTTTTATCATTTCCGTGTTCCTCCTTGGCATCGACTCCCCGCCCTAGACTGCGTTTATTCCCCTGAGCTTCGATTGAATATGCTGAGGATTGCGGGAAGAAGGTTTTCCTTTTTATCTTGGAGACCGTGTGCAGCTCCTGCCTGCTCTGCTCCGAGAAATCTGAGCCAAGGAGACAAGTTGAGTGATGGTTGGATGCCTGCCGTGGGGACTTCGCCGCTTCTGGCTCCCAAGAGTGATTTCAATGGAGTGTACAGAGGATTCTCAACTGAATCTCTAGTCCCCAGACATCAAGATGTGGGCTTATCCGATCACCCTCCCACCACCGCTGCTCTAAAGAACCCGACCTCACAAATCCTCTACGACGAATACAATCATGAACGATATCCCCCCGGAGATCCCAGCAAGCGAGCTTTTGCCTATTTCGTCCTAACCGGCGGACGATTCGTATACGCCTCGTTACTCCGTCTGTTCATTCTAAAGTTCGTGCTAAGCATGTCGGCGAGCAAAGACGTCCTCGCCTTGGCTTCTCTAGAGGTTGACCTCTCCAGCATCGAGCCAGGTTCAACGGTAACCGTGAAATGGCGTGGAAAGCCGGTCTTCATAAGGCGTCGAACCGAGAACGATATCAAGCTGGCTAACAGCGTGGATGTCACTTCGCTGCGCGATCCCGAGGAAGATGTTGCGAGGGTGAAGAATCCTGAGTGGCTTGTTGTGGTGGGTGTGTGTACTCATCTGGGCTGCATCCCTCTGCCTAATGCTGGTGATTTTGGTGGCTGGTTCTGCCCTTGCCATGGATCACATTATGATATTTCTGGGAGGATTAGGAGGGGACCGGCGCCTTATAATTTGGAAAGTTCCTACGTACACTTTCTTGGACGAGAACAAGTTGCTGATTGCTTAACACTCGCTGATCATATGAATGAATTATGATAAAATTATTTATATTGTATGCTTTATGCCCTAAAAAATGACAGGAATTTTTATTAAT

Sequences View:[Contig0329](Singleton Sequence)

Contig0329 1040  bases 
AAGCAGTGGTATCAACGCAGAGTGGCTATTACGGCCGGGGGACCTTCTTCCCTTTTATCATTTCCGTGTTCCTCCTTGGCATCGACTCCCCGCCCTAGACTGCGTTTATTCCCCTGAGCTTCGATTGAATATGCTGAGGATTGCGGGAAGAAGGTTTTCCTTTTTATCTTGGAGACCGTGTGCAGCTCCTGCCTGCTCTGCTCCGAGAAATCTGAGCCAAGGAGACAAGTTGAGTGATGGTTGGATGCCTGCCGTGGGGACTTCGCCGCTTCTGGCTCCCAAGAGTGATTTCAATGGAGTGTACAGAGGATTCTCAACTGAATCTCTAGTCCCCAGACATCAAGATGTGGGCTTATCCGATCACCCTCCCACCACCGCTGCTCTAAAGAACCCGACCTCACAAATCCTCTACGACGAATACAATCATGAACGATATCCCCCCGGAGATCCCAGCAAGCGAGCTTTTGCCTATTTCGTCCTAACCGGCGGACGATTCGTATACGCCTCGTTACTCCGTCTGTTCATTCTAAAGTTCGTGCTAAGCATGTCGGCGAGCAAAGACGTCCTCGCCTTGGCTTCTCTAGAGGTTGACCTCTCCAGCATCGAGCCAGGTTCAACGGTAACCGTGAAATGGCGTGGAAAGCCGGTCTTCATAAGGCGTCGAACCGAGAACGATATCAAGCTGGCTAACAGCGTGGATGTCACTTCGCTGCGCGATCCCGAGGAAGATGTTGCGAGGGTGAAGAATCCTGAGTGGCTTGTTGTGGTGGGTGTGTGTACTCATCTGGGCTGCATCCCTCTGCCTAATGCTGGTGATTTTGGTGGCTGGTTCTGCCCTTGCCATGGATCACATTATGATATTTCTGGGAGGATTAGGAGGGGACCGGCGCCTTATAATTTGGAAAGTTCCTACGTACACTTTCTTGGACGAGAACAAGTTGCTGATTGCTTAACACTCGCTGATCATATGAATGAATTATGATAAAATTATTTATATTGTATGCTTTATGCCCTAAAAAATGACAGGAATTTTTATTAAT

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002297879.1	predicted protein	Populus trichocarpa	275	382 bits (982)	e-106	192/267 (71%)	214/267 (80%), Gaps = 2/267 (0%)	+2

KEGG Pathway	GO
Contig0329[1 Pathway]	Contig0329[18 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Energy Metabolism	00190	Oxidative phosphorylation	[PATH:ath00190]	Contig0329	AT5G13430	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G13430	AT5G13430	membrane	GO:0016020	other membranes
AT5G13430	AT5G13430	metal ion binding	GO:0046872	other binding
AT5G13430	AT5G13430	mitochondrion	GO:0005739	mitochondria
AT5G13430	AT5G13430	mitochondrion	GO:0005739	mitochondria
AT5G13430	AT5G13430	mitochondrial respiratory chain complex III	GO:0005750	mitochondria
AT5G13430	AT5G13430	mitochondrial respiratory chain complex III	GO:0005750	other membranes
AT5G13430	AT5G13430	mitochondrial respiratory chain complex III	GO:0005750	other cytoplasmic components
AT5G13430	AT5G13430	mitochondrial respiratory chain complex III	GO:0005750	other intracellular components
AT5G13430	AT5G13430	oxidation-reduction process	GO:0055114	other metabolic processes
AT5G13430	AT5G13430	membrane	GO:0016020	other membranes
AT5G13430	AT5G13430	metal ion binding	GO:0046872	other binding
AT5G13430	AT5G13430	mitochondrion	GO:0005739	mitochondria
AT5G13430	AT5G13430	mitochondrion	GO:0005739	mitochondria
AT5G13430	AT5G13430	mitochondrial respiratory chain complex III	GO:0005750	mitochondria
AT5G13430	AT5G13430	mitochondrial respiratory chain complex III	GO:0005750	other membranes
AT5G13430	AT5G13430	mitochondrial respiratory chain complex III	GO:0005750	other cytoplasmic components
AT5G13430	AT5G13430	mitochondrial respiratory chain complex III	GO:0005750	other intracellular components
AT5G13430	AT5G13430	oxidation-reduction process	GO:0055114	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig0329[interact with..]	Not found!