Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	Contig0023	677

Contig Map:

(ProjectName=FCTEVCP SequenceName=Contig0023):
FCTEVCPM004_B12_PDNR-F:
FCTEVCPM098_B10_PDNR-F:
FCTEVCPM095_G12_PDNR-F:
FCTEVCPM075_C03_PDNR-F:
FCTEVCPM032_A09_PDNR-F:
FCTEVCPM099_G08_PDNR-F:
FCTEVCPM037_C11_PDNR-F:
FCTEVCPM096_H12_PDNR-F:
FCTEVCPM004_E02_PDNR-F:
FCTEVCPM036_H12_PDNR-F:
FCTEVCPM033_A01_PDNR-F:
FCTEVCPM141_B04_pDNR-F:
FCTEVCPM141_G04_pDNR-F:
FCTEVCPM027_F12_PDNR-F:
FCTEVCPM127_G09_PDNR-F:
FCTEVCPM096_G09_PDNR-F:

Sequences View:[Contig0023](Contig Seguence)

Sequences View:[Contig0023](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_176291.1	FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding	Arabidopsis thaliana	148	142 bits (357)	3e-32	72/130 (55%)	86/130 (66%)	+1

KEGG Pathway	GO
Contig0023[1 Pathway]	Contig0023[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Energy Metabolism	00195	Photosynthesis	[PATH:ath00195]	Contig0023	AT1G60950	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G60950	AT1G60950	chloroplast	GO:0009507	chloroplast
AT1G60950	AT1G60950	electron carrier activity	GO:0009055	other molecular functions
AT1G60950	AT1G60950	iron-sulfur cluster binding	GO:0051536	other binding
AT1G60950	AT1G60950	"2 iron, 2 sulfur cluster binding"	GO:0051537	other binding
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	plastid
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	chloroplast
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	other cytoplasmic components
AT1G60950	AT1G60950	chloroplast stroma	GO:0009570	other intracellular components
AT1G60950	AT1G60950	response to light stimulus	GO:0009416	response to abiotic or biotic stimulus
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other cellular processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other metabolic processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	electron transport or energy pathways
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other cellular processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	other metabolic processes
AT1G60950	AT1G60950	photosynthetic electron transport chain	GO:0009767	electron transport or energy pathways

Gene Network Informations
Gene Network	Interact with..
Contig0023[interact with..]	FCTEVCPM103_F02_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FCTEVCPM103_F02_PDNR-F	860	ref	XP_002311943.1	predicted protein	Populus trichocarpa	155	190 bits (482)	2e-46	99/157 (63%)	116/157 (73%), Gaps = 13/157 (8%)	+3