Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	FAECPM018_F04_PDNR-F	723

Contig Map:

(ProjectName=FAECPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FAECPM018_F04_PDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002318240.1	predicted protein	Populus trichocarpa	143	197 bits (502)	6e-49	102/143 (71%)	108/143 (75%), Gaps = 1/143 (0%)	+1

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[56 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	FAECPM018_F04_PDNR-F	AT5G51940	FAECPM
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	FAECPM018_F04_PDNR-F	AT5G51940	FAECPM
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	FAECPM018_F04_PDNR-F	AT5G51940	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
FAECPM018_F04_PDNR-F[interact with..]	FAECPM026_E02_PDNR-F FAECPM020_C07_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FAECPM026_E02_PDNR-F	595	ref	XP_002517812.1	DNA-directed RNA polymerase II 13.6 kD polypeptide, putative	Ricinus communis	156	190 bits (482)	8e-47	91/100 (91%)	96/100 (96%)	+3
FAECPM020_C07_PDNR-F	634	ref	XP_002267800.1	PREDICTED: hypothetical protein	Vitis vinifera	51	108 bits (270)	3e-22	49/51 (96%)	49/51 (96%)	+1