Back [Phalaenopsis Transcriptome]
Contig Information:
| Project Name | Query Name | Length of query |
|---|
| 454 | contig05191 | 490 |
Contig Map:
(ProjectName=454
SequenceName=NoContigFind): |  |
Sequences View:[NoContigFind](Contig Seguence)
Sequences View:[contig05191](Singleton Sequence)
Contig Annotation:
| GenBank | Accession number
(Best hits in the GenBank) | Annotation | Species | Length of homologous protein(Amino Acid) | Score | Expect value | Identities | similarity | Frame |
|---|
| ref | XP_002529850.1 | ribosome biogenesis protein nop10, putative | Ricinus communis | 64 | 120 bits (300) | 6e-26 | 55/64 (85%) | 61/64 (95%) | +2 |
Pathway Informations
| First-level terms | Second-level terms | KEGG pathway Num | KEGG pathway Name | KEGG pathway Description | contig Name | locusName | project Name |
| Genetic Information Processing | Translation | 03013 | RNA transport | [PATH:ath03013] | contig05191 | AT2G20490 | 454 |
GO Informations
| Locus Name | Go Name | Go Class Descriptions | GO id | Anotations01 |
| AT2G20490 | AT2G20490 | nucleolus | GO:0005730 | nucleus |
| AT2G20490 | AT2G20490 | nucleolus | GO:0005730 | other intracellular components |
| AT2G20490 | AT2G20490 | Cajal body | GO:0015030 | nucleus |
| AT2G20490 | AT2G20490 | Cajal body | GO:0015030 | other intracellular components |
| AT2G20490 | AT2G20490 | nucleolus | GO:0005730 | nucleus |
| AT2G20490 | AT2G20490 | nucleolus | GO:0005730 | other intracellular components |
| AT2G20490 | AT2G20490 | RNA binding | GO:0003723 | DNA or RNA binding |
| AT2G20490 | AT2G20490 | polar nucleus fusion | GO:0010197 | developmental processes |
| AT2G20490 | AT2G20490 | polar nucleus fusion | GO:0010197 | other cellular processes |
| AT2G20490 | AT2G20490 | polar nucleus fusion | GO:0010197 | cell organization and biogenesis |
| AT2G20490 | AT2G20490 | nucleolus | GO:0005730 | nucleus |
| AT2G20490 | AT2G20490 | nucleolus | GO:0005730 | other intracellular components |
| Query Name | Length of query | GenBank | Accession number(Best hits in the GenBank) | Annotation | Species | Length of homologous protein(Amino Acid) | Score | Expect value | Identities | similarity | Frame |
|---|
| contig01122 | 267 | ref | XP_002325418.1 | predicted protein | Populus trichocarpa | 188 | 69.3 bits (168) | 1e-10 | 30/33 (90%) | 33/33 (100%) | +2 |
| contig07398 | 232 | ref | XP_002323264.1 | predicted protein | Populus trichocarpa | 482 | 126 bits (316) | 9e-28 | 61/77 (79%) | 65/77 (84%) | +2 |
| contig07441 | 396 | ref | XP_002457587.1 | hypothetical protein SORBIDRAFT_03g009870 | Sorghum bicolor | 584 | 194 bits (493) | 3e-48 | 93/103 (90%) | 96/103 (93%) | -1 |
| contig06911 | 286 | ref | NP_001048001.1 | Os02g0728600 | Oryza sativa (japonica cultivar-group) | 150 | 172 bits (437) | 8e-42 | 81/95 (85%) | 92/95 (96%) | +2 |