Back [Phalaenopsis Transcriptome]
Library Name:       Contig Lists:     
Contig Information:
Project NameQuery NameLength of query
FPTEVCPMFPTEVCPM066_G12_PDNR-F1164

Contig Map:
(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)


Sequences View:[FPTEVCPM066_G12_PDNR-F](Singleton Sequence)

Contig Annotation:
GenBankAccession number
(Best hits in the GenBank)
AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
refNP_001149721.1 transcription initiation factor IIB Zea mays312441 bits (1133)e-132215/232 (92%)226/232 (97%) +1

KEGG PathwayGO
NoContigFind[1 Pathway]NoContigFind[19 GoTerm]
Pathway Informations
First-level termsSecond-level termsKEGG pathway NumKEGG pathway NameKEGG pathway Description contig NamelocusNameproject Name
Genetic Information ProcessingTranscription03022Basal transcription factors[PATH:ath03022]FPTEVCPM066_G12_PDNR-FAT3G10330FPTEVCPM

GO Informations
Locus NameGo NameGo Class DescriptionsGO idAnotations01
AT3G10330AT3G10330translation initiation factor activityGO:0003743nucleic acid binding
AT3G10330AT3G10330zinc ion bindingGO:0008270other binding
AT3G10330AT3G10330translational initiationGO:0006413protein metabolism
AT3G10330AT3G10330translational initiationGO:0006413other cellular processes
AT3G10330AT3G10330translational initiationGO:0006413other metabolic processes
AT3G10330AT3G10330translational initiationGO:0006413cell organization and biogenesis
AT3G10330AT3G10330"transcription initiation, DNA-dependent"GO:0006352transcription
AT3G10330AT3G10330"transcription initiation, DNA-dependent"GO:0006352other cellular processes
AT3G10330AT3G10330"transcription initiation, DNA-dependent"GO:0006352other metabolic processes
AT3G10330AT3G10330"regulation of transcription, DNA-dependent"GO:0006355transcription
AT3G10330AT3G10330"regulation of transcription, DNA-dependent"GO:0006355other cellular processes
AT3G10330AT3G10330"regulation of transcription, DNA-dependent"GO:0006355other metabolic processes
AT3G10330AT3G10330transcription regulator activityGO:0030528other molecular functions
AT3G10330AT3G10330regulation of transcriptionGO:0045449transcription
AT3G10330AT3G10330regulation of transcriptionGO:0045449other cellular processes
AT3G10330AT3G10330regulation of transcriptionGO:0045449other metabolic processes
AT3G10330AT3G10330cytoplasmGO:0005737other cytoplasmic components
AT3G10330AT3G10330nucleusGO:0005634nucleus
AT3G10330AT3G10330RNA polymerase II transcription factor activityGO:0003702other molecular functions

Gene Network Informations
Gene NetworkInteract with..
FPTEVCPM066_G12_PDNR-F[interact with..]Contig1228
FPTEVCPM003_B01_pDNR-F
Contig1227
Query NameLength of queryGenBankAccession number(Best hits in the GenBank)AnnotationSpeciesLength of homologous protein(Amino Acid)ScoreExpect valueIdentitiessimilarityFrame
Contig12281150refXP_002301540.1 predicted protein Populus trichocarpa540401 bits (1030)e-118193/269 (71%)218/269 (81%) +2
FPTEVCPM003_B01_pDNR-F1127embCBI25992.1 unnamed protein product Vitis vinifera212203 bits (517)3e-5093/117 (79%)104/117 (88%) +3
Contig12271210refXP_002441353.1 hypothetical protein SORBIDRAFT_09g025080 Sorghum bicolor267396 bits (1018)e-108197/265 (74%)221/265 (83%), Gaps = 7/265 (2%) +2